Urban infrastructure and spatiotemporal environmental features for EGFR-mutant lung cancer
Lu, D.; Cui, L.; Kunz, N.; Wong, M.; Tayarani, M.; Solomon, J. P.; Garcia, C. A.; Altorki, N. K.; Choi, E.; Gao, H. O.; Shieh, Y.
Show abstract
Background: Lung cancer in never-smokers is rising, with a substantial proportion harboring the EGFR mutation. While fine particulate matter (PM2.5) is a recognized risk factor, other intervenable pollutants and built environmental factors remain unknown. Objectives: To identify urban characteristics associated with EGFR-mutant (vs. wild-type) lung cancer using high-resolution spatiotemporal data. Methods: We analyzed 2,699 lung cancer patients with documented EGFR status treated at a high-volume academic medical center in New York City. Patient residential addresses were linked to high-resolution (300m x 300m) 5-year cumulative exposures to 3 air pollutants and 26 urban features. We developed Light Gradient Boosting Machine (LightGBM) models to classify EGFR status, comparing a basic clinical model with established predictors (Asian, female, never-smoking status, and adenocarcinoma histology) to an extended model with additional urban factors. Predictive performance was assessed based on discrimination (AUC). Results: We included 2,699 patients, of whom 54.1% were female and 25.8% self-identified as Asian, 11.2% as Black, and 7.4% as Hispanic; and 29% had EGFR-mutated cancer. The extended model showed modest improvements in discrimination (AUC: 0.775 [95% CI, 0.739-0.809] vs. 0.768 [0.723-0.811]), compared to the clinical model. Newly identified factors for EGFR-mutant status included black carbon (BC), nitrogen dioxide (NO2), proximity to airports, reduced access to public transportation, elevated noise levels, and lead exposure. Conclusions: Traffic-related pollutants (BC, NO2) from diesel engines and motor vehicles, and proximity to airports, were among the novel spatiotemporal features associated with EGFR-mutant lung cancer. These results may inform policy interventions.
Matching journals
The top 8 journals account for 50% of the predicted probability mass.
Similar papers in this journal
- Design and methodological considerations for biomarker discovery and validation in the Integrative Analysis of Lung Cancer Etiology and Risk (INTEGRAL) Program 89%
- Increasing concentration of COVID-19 by socioeconomic determinants and geography in Toronto, Canada: an observational study 89%
- Deprivation and Segregation in Ovarian cancer survival among African American Women: a mediated analysis 88%
Similar papers in this journal
- Rural Roads to Cognitive Resilience (RRR): A prospective cohort study protocol 92%
- Rationale and study protocol of the MAMELI Cohort study (MApping the Methylation of repetitive elements to track the Exposome effects on health: the city of Legnano as a LIving lab) 92%
- A tree-planting decision support tool for urban heat island mitigation 90%
Similar papers in this journal
- Prediction of radiation-induced hypothyroidism using radiomic data analysis does not show superiority over standard normal tissue complication models 90%
- Blood cytokine analysis suggests that SARS-CoV-2 infection results in a sustained tumour promoting environment in cancer patients 89%
- Functional signatures in non-small-cell lung cancer: a systematic review and meta-analysis of sex-based differences in transcriptomic studies 89%
Similar papers in this journal
- Can tracking mobility be used as a public health tool against COVID-19 following the expiration of stay-at-home mandates? 91%
- Short-term change in air pollution following the COVID-19 state of emergency: A national analysis for the United States 90%
- Particulate Matter emission sources and meteorological parameters combine to shape the airborne microbiome communities in the Ligurian coast, Italy 90%
Similar papers in this journal
"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.