Back

High-Resolution 3D Mapping of Human Cortical Vasculature

Curcic, V.; Adolfs, Y.; van Osch, M. J. P.; Pasterkamp, R. J.; Petridou, N.

2026-05-15 neuroscience
10.64898/2026.05.14.724532 bioRxiv
Show abstract

A quantitative description of the three-dimensional organization of the human cortical vasculature at micron scale is critical for understanding the influence of the vascular architecture on cerebral blood flow, neurovascular coupling, neurological disease, and human neuroimaging signals. However, high-resolution volumetric vascular data from human cortex are scarce, as the acquisition relies on postmortem microscopy, and tissue-clearing and whole-mount immunolabeling approaches developed for rodent tissues are less effective in heavily crosslinked, pigment rich fixed human cortex. Here we introduce h-iDISCO+, a workflow that enables whole-mount immunolabeling and high-resolution light-sheet imaging of arteries, capillaries, and veins in long-term formalin fixed human brain tissue. By integrating extended oxidative and photobleaching prior to tissue staining, we achieve uniform sample transparency and full-depth antibody penetration. Applying this workflow to tissue samples from human primary visual cortex, we quantified vessel geometrical properties and vascular density across cortical depth. This approach allows quantitative reconstruction of human cortical vascular networks at micron resolution, enabling volumetric datasets of the human cortical vasculature that were previously unavailable.

Matching journals

The top 9 journals account for 50% of the predicted probability mass.

1
Nature Communications
4913 papers in training set
Top 10%
14.4%
2
Advanced Science
249 papers in training set
Top 2%
7.2%
3
Nature Methods
336 papers in training set
Top 1%
7.2%
4
Optica
25 papers in training set
Top 0.2%
4.9%
5
Nature
575 papers in training set
Top 6%
4.2%
6
Scientific Reports
3102 papers in training set
Top 36%
3.6%
7
Communications Biology
886 papers in training set
Top 3%
3.1%
8
Cell Reports Methods
141 papers in training set
Top 1%
3.1%
9
Nature Biotechnology
147 papers in training set
Top 3%
2.7%
50% of probability mass above
10
Cell Reports
1338 papers in training set
Top 19%
2.6%
11
eLife
5422 papers in training set
Top 32%
2.6%
12
Neuron
282 papers in training set
Top 5%
2.6%
13
PLOS ONE
4510 papers in training set
Top 46%
2.4%
14
Nature Biomedical Engineering
42 papers in training set
Top 0.6%
2.1%
15
Science Advances
1098 papers in training set
Top 12%
2.1%
16
Nature Neuroscience
216 papers in training set
Top 4%
1.9%
17
Proceedings of the National Academy of Sciences
2130 papers in training set
Top 31%
1.8%
18
NeuroImage
813 papers in training set
Top 4%
1.7%
19
IEEE Transactions on Medical Imaging
18 papers in training set
Top 0.3%
1.7%
20
Science
429 papers in training set
Top 14%
1.7%
21
Imaging Neuroscience
242 papers in training set
Top 2%
1.7%
22
PLOS Computational Biology
1633 papers in training set
Top 18%
1.3%
23
EMBO Molecular Medicine
85 papers in training set
Top 2%
1.3%
24
Cell
370 papers in training set
Top 14%
1.2%
25
iScience
1063 papers in training set
Top 24%
1.0%
26
Neurophotonics
37 papers in training set
Top 0.5%
1.0%
27
Scientific Data
174 papers in training set
Top 2%
0.9%
28
Light: Science & Applications
16 papers in training set
Top 0.6%
0.8%
29
Biomedical Optics Express
84 papers in training set
Top 1%
0.8%
30
Journal of Cerebral Blood Flow & Metabolism
43 papers in training set
Top 0.7%
0.8%