Back

Assembly-active and -inactive forms of HBV capsid protein provide distinctly different binding sites for capsid assembly modulators

Scott, L. W.; Perez-Segura, C.; Hadden-Perilla, J.; Zlotnick, A.

2026-05-14 biochemistry
10.64898/2026.05.13.724798 bioRxiv
Show abstract

In an infection, Hepatitis B Virus (HBV) core protein (HBc) normally assembles into icosahedral capsids. Capsid Assembly Modulators (CAMs) are direct acting antivirals that induce HBc mis-assembly and are the subject of active research and development. Two versions of HBc are used in structural studies of CAM-HBc complexes: Cp150 and Cp149-Y132A. Cp150 forms empty icosahedral capsids that are structurally indistinguishable from those found in virions. The Y132A mutation of Cp149 leads to an assembly defective soluble protein that crystalizes as flat hexagonal sheets, where the hexagons resemble icosahedral quasi-sixfold vertices. In this study, we compare structures of CAM-bound Cp150 to CAM-bound Cp149-Y132A. In capsids, the residues forming the CAM site shift to match the structure of bound CAMs, an induced fit. In Cp149-Y132A crystals, CAM sites show little structural adjustment in response to different CAMs binding. In turn, the array of residues that interact with CAMs varies from CAM to CAM in capsid structures but remains nearly constant in Cp149-Y132A crystals. These results illustrate important differences between CAM binding in Cp149-Y132A and Cp150 structures that will contribute to future CAM design.

Matching journals

The top 12 journals account for 50% of the predicted probability mass.

1
Journal of Molecular Biology
217 papers in training set
Top 0.1%
8.4%
2
Antiviral Research
49 papers in training set
Top 0.1%
6.4%
3
Viruses
318 papers in training set
Top 1%
4.9%
4
Acta Crystallographica Section D Structural Biology
54 papers in training set
Top 0.1%
4.3%
5
PLOS ONE
4510 papers in training set
Top 33%
4.3%
6
Journal of Virology
456 papers in training set
Top 1%
4.0%
7
PLOS Pathogens
721 papers in training set
Top 3%
3.7%
8
Scientific Reports
3102 papers in training set
Top 36%
3.6%
9
Proteins: Structure, Function, and Bioinformatics
82 papers in training set
Top 0.2%
3.6%
10
Structure
175 papers in training set
Top 1.0%
3.1%
11
Protein Science
221 papers in training set
Top 0.5%
2.6%
12
mBio
750 papers in training set
Top 6%
2.4%
50% of probability mass above
13
Journal of Biological Chemistry
641 papers in training set
Top 1%
2.4%
14
Journal of Chemical Information and Modeling
207 papers in training set
Top 2%
2.4%
15
Frontiers in Microbiology
375 papers in training set
Top 4%
2.1%
16
Journal of Structural Biology
58 papers in training set
Top 0.5%
2.1%
17
Biochemistry
130 papers in training set
Top 0.7%
1.9%
18
eLife
5422 papers in training set
Top 42%
1.7%
19
ACS Infectious Diseases
74 papers in training set
Top 0.7%
1.5%
20
Nucleic Acids Research
1128 papers in training set
Top 12%
1.5%
21
ACS Chemical Biology
150 papers in training set
Top 1%
1.3%
22
Frontiers in Molecular Biosciences
100 papers in training set
Top 2%
1.3%
23
Communications Biology
886 papers in training set
Top 14%
1.2%
24
Antimicrobial Agents and Chemotherapy
167 papers in training set
Top 1%
1.2%
25
Nature Communications
4913 papers in training set
Top 57%
1.2%
26
PLOS Computational Biology
1633 papers in training set
Top 20%
1.2%
27
Virology
56 papers in training set
Top 0.5%
1.0%
28
IUCrJ
29 papers in training set
Top 0.3%
0.9%
29
Frontiers in Virology
15 papers in training set
Top 0.1%
0.9%
30
International Journal of Molecular Sciences
453 papers in training set
Top 13%
0.9%