A multi-modal phase plane method for constructing multivariate disease trajectories.
Cox, T.; Shishegar, R.; Bourgeat, P.; Cespedes, M.; Dore, V.; Doecke, J. D.; Fripp, J. D.; Rowe, C. C.; Masters, C. L.; Villemagne, V. L. C.; Burnham, S.
Show abstract
Understanding the sequential order and timing of different biomarkers in the progression of Alzheimer's disease (AD) is paramount for understanding the pathophysiology of the disease, leading to better staging and improved prediction of clinical progression, providing crucial knowledge for the design and timing of effective clinical therapeutic trials. This study developed and evaluated a multi-modal phase plane (MMPP) method to construct long-term multivariate disease trajectory curves from short term longitudinal data for neuro-degenerative diseases like AD. The MMPP method is an extension to a previously presented four-step method for constructing single variable disease trajectories. A novel anchoring step which uses study participants' multivariate data to infer the staging of the separate single variable progression trajectories allows multivariate disease trajectory curves to be generated. Further, the anchoring step provides disease staging at the individual level. A bootstrapping protocol was employed, providing confidence limits on the predictions. We demonstrate that the MMPP method is able to accurately reconstruct multivariate disease trajectory curves and individuals' disease stage from simulated noisy short term longitudinal data. Specifically, the method successfully estimated the delay times between distinct progressing variables and reliably predicted individual baseline disease times (r2 = 0.981) for participants exhibiting significant early biomarker deviations.
Matching journals
The top 6 journals account for 50% of the predicted probability mass.
Similar papers in this journal
- A scalable approach for continuous time Markov models with covariates 95%
- Tree-informed Bayesian multi-source domain adaptation: cross-population probabilistic cause-of-death assignment using verbal autopsy 92%
- Survival Analysis on Rare Events Using Group-Regularized Multi-Response Cox Regression 92%
Similar papers in this journal
- Modeling physician variability to prioritize relevant medical record information 91%
- Characterizing subgroup performance of probabilistic phenotype algorithms within older adults: A case study for dementia, mild cognitive impairment, and Alzheimer’s and Parkinson’s diseases 91%
- Trajectories: a framework for detecting temporal clinical event sequences from health data standardized to the OMOP Common Data Model 91%
Similar papers in this journal
- Joint Modeling of Longitudinal Biomarker and Survival Outcomes with the Presence of Competing Risk in Nested Case-Control Studies with Application to the TEDDY Microbiome Dataset 95%
- A statistical approach for tracking clonal dynamics in cancer using longitudinal next-generation sequencing data 94%
- Pathway Analysis Through Mutual Information 93%
Similar papers in this journal
- Prediction-powered Inference for Clinical Trials 94%
- Data-Driven Prediction of COVID-19 Cases in Germany for Decision Making 93%
- Towards reduction in bias in epidemic curves due to outcome misclassification through Bayesian analysis of time-series of laboratory test results: Case study of COVID-19 in Alberta, Canada and Philadelphia, USA 92%
Similar papers in this journal
- Individual Reference Intervals for Personalized Interpretation of Clinical and Metabolomics Measurements 94%
- A methodology of phenotyping ICU patients from EHR data: high-fidelity, personalized, and interpretable phenotypes estimation 93%
- SurvMaximin: Robust Federated Approach to Transporting Survival Risk Prediction Models 93%
"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.