Back

Differential Roles of PFDN5 Isoforms in Head and Neck Squamous Cell Carcinoma: Insights from Proximity Interactome Mapping

CHESNEL, F.; CHERON, A.; AUDIC, Y.; ALUSSE, A.; DUOT, M.; COM, E.; LAVIGNE, R.; PAILLARD, L.; LE GOFF, X.

2026-05-11 cancer biology
10.64898/2026.05.07.723477 bioRxiv
Show abstract

Head and neck squamous cell carcinoma (HNSCC) ranks as the seventh most common cancer, with increasing incidence and mortality rates and limited therapeutic progress. The heterohexameric prefoldin complex, a highly conserved co-chaperone assembly composed of six PFDN subunits, exhibits expression levels strongly correlated with cancer progression. Among these subunits, the PFDN5 gene presents a paradoxical role in cancer biology, demonstrating both tumor-promoting and tumor-suppressive activities. Notably, the PFDN5 gene generates two distinct protein isoforms through alternative splicing, yet their individual contributions to cancer remain unexplored. In this study, we reveal that an elevated short-to-long PFDN5 alternative splice variants ratio is significantly associated with improved overall survival in HNSCC patients. Using proximity-dependent biotin identification (BioID), we mapped shared and isoform-specific protein-protein interaction networks for PFDN5. Our analysis uncovered novel proximal interactors, implicating PFDN5 isoforms in unexpected functions, including spindle organization, transcriptional complexes, and NF-{kappa}B signaling. These results provide a foundation for exploring PFDN5 isoforms as potential therapeutic targets in HNSCC.

Matching journals

The top 10 journals account for 50% of the predicted probability mass.

1
Cell Reports
1338 papers in training set
Top 5%
8.1%
2
Advanced Science
249 papers in training set
Top 2%
6.8%
3
Nature Communications
4913 papers in training set
Top 29%
6.3%
4
eLife
5422 papers in training set
Top 17%
4.8%
5
Genomics, Proteomics & Bioinformatics
171 papers in training set
Top 1%
4.8%
6
Signal Transduction and Targeted Therapy
29 papers in training set
Top 0.2%
4.8%
7
Protein & Cell
25 papers in training set
Top 0.4%
4.3%
8
Oncogene
76 papers in training set
Top 0.4%
3.9%
9
National Science Review
22 papers in training set
Top 0.4%
3.6%
10
Cell Discovery
54 papers in training set
Top 2%
3.0%
50% of probability mass above
11
Communications Biology
886 papers in training set
Top 4%
2.3%
12
Developmental Cell
168 papers in training set
Top 7%
2.1%
13
Molecular Cancer
14 papers in training set
Top 0.2%
2.1%
14
Cell Genomics
162 papers in training set
Top 3%
1.9%
15
Molecular Cell
308 papers in training set
Top 7%
1.8%
16
Nucleic Acids Research
1128 papers in training set
Top 11%
1.7%
17
Cancer Research
116 papers in training set
Top 2%
1.7%
18
Cancer Cell
38 papers in training set
Top 1%
1.7%
19
Science China Life Sciences
26 papers in training set
Top 1.0%
1.7%
20
iScience
1063 papers in training set
Top 16%
1.7%
21
Cell Death & Disease
126 papers in training set
Top 1%
1.5%
22
Journal of Genetics and Genomics
36 papers in training set
Top 1%
1.2%
23
Cell Research
49 papers in training set
Top 2%
1.1%
24
Science Advances
1098 papers in training set
Top 25%
0.9%
25
Molecular Cancer Research
42 papers in training set
Top 0.6%
0.9%
26
Scientific Reports
3102 papers in training set
Top 71%
0.9%
27
Proceedings of the National Academy of Sciences
2130 papers in training set
Top 42%
0.9%
28
Journal of Clinical Investigation
164 papers in training set
Top 6%
0.8%
29
Genome Medicine
154 papers in training set
Top 8%
0.7%
30
Cell Death & Differentiation
48 papers in training set
Top 0.8%
0.7%