Back

Germline-mediated ubiquitous recombination in ScxCre male mice: implications for tendon research

Li, H.; Cao, C.

2026-04-21 genetics
10.64898/2026.04.16.719028 bioRxiv
Show abstract

Scleraxis (Scx), a basic helix-loop-helix (bHLH) transcription factor, is a primary marker for tendon and ligament lineages. Consequently, mouse models utilizing Cre recombinase under the control of the Scx locus represents a powerful tool for control of gene expression in tendon. The constitutive ScxCre mouse line is widely used for tendon-specific genetic manipulation. In this study, we demonstrate that ScxCre exhibits undesired significant off-target activity in the male germline, leading to ubiquitous recombination of floxed alleles in all tissues of the resulting offspring. This inheritance of recombined LoxP alleles occurs independently of Cre inheritance, indicating that ScxCre-induces recombination occurs prior to meiosis in diploid germ cells. This off-target activity is not observed in female germline. These findings highlight a critical need for stringent parental sex selection when using ScxCre lines to ensure tissue-specific targeting and avoid unintentional global gene deletion or transgene activation.

Matching journals

The top 6 journals account for 50% of the predicted probability mass.

1
Genetics
225 papers in training set
Top 0.2%
15.1%
2
The FASEB Journal
175 papers in training set
Top 0.1%
10.7%
3
Scientific Reports
3102 papers in training set
Top 5%
10.3%
4
PLOS ONE
4510 papers in training set
Top 26%
6.5%
5
Disease Models & Mechanisms
119 papers in training set
Top 0.2%
6.5%
6
eLife
5422 papers in training set
Top 12%
6.5%
50% of probability mass above
7
Frontiers in Cell and Developmental Biology
218 papers in training set
Top 0.8%
5.0%
8
Human Molecular Genetics
130 papers in training set
Top 0.7%
3.7%
9
PLOS Genetics
756 papers in training set
Top 7%
1.9%
10
Development
440 papers in training set
Top 2%
1.7%
11
npj Regenerative Medicine
21 papers in training set
Top 0.1%
1.7%
12
Nature Communications
4913 papers in training set
Top 54%
1.4%
13
Nucleic Acids Research
1128 papers in training set
Top 12%
1.4%
14
International Journal of Molecular Sciences
453 papers in training set
Top 10%
1.3%
15
Frontiers in Genetics
197 papers in training set
Top 7%
1.1%
16
JCI Insight
241 papers in training set
Top 5%
1.0%
17
Cell Reports
1338 papers in training set
Top 30%
0.9%
18
Biophysical Journal
545 papers in training set
Top 4%
0.9%
19
Frontiers in Bioengineering and Biotechnology
88 papers in training set
Top 2%
0.8%
20
Arthritis Research & Therapy
15 papers in training set
Top 0.3%
0.8%
21
Journal of Anatomy
27 papers in training set
Top 0.4%
0.7%
22
Open Biology
95 papers in training set
Top 3%
0.5%
23
iScience
1063 papers in training set
Top 40%
0.5%
24
Developmental Dynamics
50 papers in training set
Top 0.9%
0.5%
25
Proceedings of the National Academy of Sciences
2130 papers in training set
Top 48%
0.5%
26
Royal Society Open Science
193 papers in training set
Top 6%
0.5%
27
Journal of The Royal Society Interface
189 papers in training set
Top 6%
0.5%