Back

The Signal Generating (SiGn) fMRI Phantom

Galea, S.; Seychell, B. C.; Galdi, P.; Hunter, T.; Bajada, C. J.

2026-04-18 neuroscience
10.64898/2026.04.15.717370 bioRxiv
Show abstract

Functional magnetic resonance imaging (fMRI) quality assurance has traditionally relied on static, geometrically regular phantoms that cannot generate the dynamic signal changes fMRI analysis pipelines are designed to detect. Here we present the Signal Generating (SiGn) anthropomorphic brain phantom, a 3D-printed cortical model derived from an individual participants structural MRI, filled with tissue-mimicking agar gels and coupled to a hemin-based infusion system that produces controlled, time-varying T *-weighted signal changes. We validated the phantom across two scanning sessions on a 3 T Siemens MAGNETOM Vida scanner, demonstrating that hemin infusion produced spatially localised activation detectable by standard general linear model analyses. Because the phantoms geometry is derived from real participant anatomy, its functional data can be coregistered and spatially normalised to standard brain templates through the same pipeline applied to human data, enabling end-to-end assessment of how each preprocessing step affects a known ground-truth signal. To support adoption and reproducibility, we openly release the full resource at https://doi.org/10.60809/drum.31411158, including 3D-printable STL model files, tissue-mimicking gel recipes, the BIDS-formatted dataset, preprocessing and analysis scripts, and a containerised reproducibility workflow; the corresponding archival container image is also deposited on Zenodo at https://doi.org/10.5281/zenodo.19495290. This framework is intended to lower the barrier for other groups to fabricate, scan, and analyse an equivalent device on their own hardware, adapt it to specific research questions, and iteratively improve the design, thereby supporting more rigorous and transparent fMRI quality assurance practices across the neuroimaging community.

Matching journals

The top 4 journals account for 50% of the predicted probability mass.

1
NeuroImage
813 papers in training set
Top 0.5%
22.2%
2
Imaging Neuroscience
242 papers in training set
Top 0.1%
18.4%
3
Nature Communications
4913 papers in training set
Top 24%
8.1%
4
Aperture Neuro
18 papers in training set
Top 0.1%
6.7%
50% of probability mass above
5
Human Brain Mapping
295 papers in training set
Top 1%
4.8%
6
Scientific Data
174 papers in training set
Top 0.4%
3.9%
7
Nature Methods
336 papers in training set
Top 3%
3.5%
8
Magnetic Resonance in Medicine
72 papers in training set
Top 0.3%
3.5%
9
eneuro
389 papers in training set
Top 5%
1.8%
10
eLife
5422 papers in training set
Top 40%
1.8%
11
Frontiers in Neuroimaging
11 papers in training set
Top 0.1%
1.8%
12
Medical Image Analysis
33 papers in training set
Top 0.6%
1.7%
13
PLOS ONE
4510 papers in training set
Top 57%
1.5%
14
Scientific Reports
3102 papers in training set
Top 62%
1.5%
15
Communications Biology
886 papers in training set
Top 15%
1.2%
16
Magnetic Resonance Imaging
21 papers in training set
Top 0.4%
1.2%
17
Nature
575 papers in training set
Top 14%
0.9%
18
Neuron
282 papers in training set
Top 9%
0.7%
19
Proceedings of the National Academy of Sciences
2130 papers in training set
Top 45%
0.7%
20
Frontiers in Neuroscience
223 papers in training set
Top 8%
0.7%
21
Frontiers in Psychiatry
83 papers in training set
Top 3%
0.7%
22
PLOS Biology
408 papers in training set
Top 22%
0.7%
23
Frontiers in Neuroinformatics
38 papers in training set
Top 0.9%
0.7%
24
PLOS Computational Biology
1633 papers in training set
Top 26%
0.7%
25
Nature Neuroscience
216 papers in training set
Top 7%
0.6%
26
Developmental Cognitive Neuroscience
81 papers in training set
Top 0.7%
0.6%
27
Network Neuroscience
116 papers in training set
Top 1%
0.6%