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Evolved differences in microglial cell biology between surface and cave populations of Astyanax mexicanus

Mendez Scolari, E.; Amanyi, O. K.; Rastogi, A.; Duboue, E. R.; Keene, A. C.; Iyer, H.

2026-04-13 evolutionary biology
10.64898/2026.04.11.717796 bioRxiv
Show abstract

Microglia govern multiple aspects of brain architecture and function by eliminating dying cells, stimulating neurogenesis, refining neural connections, and orchestrating immune responses. The Mexican tetra, Astyanax mexicanus, is a powerful model system for investigating the evolution of brain function, yet microglia have not been investigated in this system. A. mexicanus exists as surface-dwelling and cave morphotypes with prominent behavioral and physiological differences. Notably, these evolved behavioral and physiological changes in cavefish, including diminished immune response, sleep, circadian rhythms, and sensory processing, are directly linked to known microglial functions. These observations suggest that evolved differences in microglia may shape brain circuitry adaptations in cavefish. Here we develop an experimental toolbox to examine microglial specification, dynamics, and function in A. mexicanus to perform comparative analysis of microglial cell biology between the surface and cave morphotypes. We find that the cave populations show increased numbers of microglia over developmental time relative to their surface counterparts. Microglia in Astyanax rapidly expand in response to inflammatory cues, distinct from microglial responses in the related teleost, zebrafish. Furthermore, lysosomal compartments of microglia in the cave populations exhibit increased enhanced proteolytic activity and reduced pH relative to surface morphotypes. Together, our observations reveal evolved differences in microglial cell biology between surface and cave populations of A. mexicanus and provide a framework to uncover novel neuroimmune mechanisms underlying the remarkable adaptations of A. mexicanus.

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