Back

TCMCard: A High-Confidence Digital Infrastructure for Traditional Chinese Medicine Quantified by Multi-Dimensional Evidence Integration

Wang, Y.; Dong, W.; Yao, J.; Wang, K.; Zhang, L.; Wang, Y.; Guo, S.; Li, H.; Cai, H.; Wang, X.; Li, Y.

2026-04-10 bioinformatics
10.64898/2026.04.07.716940 bioRxiv
Show abstract

Network pharmacology has become a widely used approach for deciphering multi-component, multi-target mechanisms of traditional Chinese medicine (TCM). Here we introduce TCMCard, a high-confidence digital infrastructure built on a Multi-Dimensional Evidence Integration (MDEI) framework. The framework integrates experimental activity data from authoritative chemical databases, literature-derived evidence, and structure-based similarity inference. Preprocessing steps include chemical structure normalization, species-specific filtering, and target quality scoring. Applied to conventional interaction datasets, this pipeline leads to the removal of over 60% of low-confidence noise. TCMCard supports network pharmacology exploration through an interactive visualization platform, and module analysis identifies functionally relevant communities that offer insights into the synergistic actions of TCM formulas. Overall, TCMCard may help move the field beyond simple data aggregation toward evidence-informed curation and quality-driven analysis. As an interactive and publicly accessible platform, it reveals an organized backbone within complex interaction networks, offering a more reliable basis for understanding multi-component synergy in TCM.

Matching journals

The top 5 journals account for 50% of the predicted probability mass.

1
Advanced Science
249 papers in training set
Top 0.1%
22.8%
2
Journal of Chemical Information and Modeling
207 papers in training set
Top 0.5%
10.6%
3
Nature Communications
4913 papers in training set
Top 26%
6.9%
4
Briefings in Bioinformatics
326 papers in training set
Top 0.8%
6.4%
5
Nucleic Acids Research
1128 papers in training set
Top 4%
4.9%
50% of probability mass above
6
Computational and Structural Biotechnology Journal
216 papers in training set
Top 0.8%
4.9%
7
Bioinformatics
1061 papers in training set
Top 5%
3.6%
8
Genomics, Proteomics & Bioinformatics
171 papers in training set
Top 2%
3.6%
9
Patterns
70 papers in training set
Top 0.4%
2.6%
10
Bioinformatics Advances
184 papers in training set
Top 3%
1.8%
11
PLOS Computational Biology
1633 papers in training set
Top 16%
1.7%
12
Communications Biology
886 papers in training set
Top 8%
1.7%
13
iScience
1063 papers in training set
Top 15%
1.7%
14
Molecular Plant
36 papers in training set
Top 0.9%
1.3%
15
eLife
5422 papers in training set
Top 47%
1.3%
16
npj Systems Biology and Applications
99 papers in training set
Top 1%
1.2%
17
BMC Bioinformatics
383 papers in training set
Top 6%
0.9%
18
Communications Chemistry
39 papers in training set
Top 0.7%
0.9%
19
PLOS ONE
4510 papers in training set
Top 66%
0.8%
20
Plant Communications
35 papers in training set
Top 1%
0.8%
21
Nature Machine Intelligence
61 papers in training set
Top 3%
0.8%
22
Proceedings of the National Academy of Sciences
2130 papers in training set
Top 44%
0.8%
23
Scientific Reports
3102 papers in training set
Top 74%
0.8%
24
NAR Genomics and Bioinformatics
214 papers in training set
Top 4%
0.8%
25
Genome Medicine
154 papers in training set
Top 8%
0.8%
26
Science Bulletin
22 papers in training set
Top 1%
0.7%
27
Quantitative Biology
11 papers in training set
Top 0.9%
0.7%
28
ACS Omega
90 papers in training set
Top 5%
0.7%
29
Nature Biomedical Engineering
42 papers in training set
Top 2%
0.7%
30
Computers in Biology and Medicine
120 papers in training set
Top 6%
0.5%