Back

Isotopic tracing of scyllo-inositol uncovers its incorporation into phosphatidylinositols in mammalian cells

Amma, M. M.; Kollipara, L.; Schmieder, P.; Saiardi, A.; Heiles, S.; Fiedler, D.

2026-04-09 biochemistry
10.64898/2026.04.07.716873 bioRxiv
Show abstract

Inositols are a family of cyclic sugar alcohols comprising nine stereoisomers. Myo-inositol is the most abundant isomer found in humans and has been studied most extensively. It plays an important role in osmoregulation and is incorporated into membrane-anchored phosphatidylinositols. Scyllo-inositol is the second most abundant inositol isomer in the human brain and aberrant concentrations are associated with various diseases; however, its biological functions remain poorly understood. Here, the development and application of [13C6]scyllo-inositol as an isotopic tracer to study its metabolism is reported. A concise and robust synthetic route was established to obtain [13C6]scyllo-inositol from [13C6]myo-inositol in good yield. The uptake of [13C6]scyllo-inositol and responses of endogenous inositol isomers were measured in multiple cell lines by HILIC-MS/MS, showcasing the advantages of isotopic tracing. [13C6]scyllo-inositol proved to be a versatile isotopic tracer, when coupled with MS-based lipidomics and 2D NMR experiments. These experiments provide evidence that scyllo-inositol is incorporated into phosphatidylinositols in different cell lines. The results suggest a previously underappreciated role of scyllo-inositol in mammalian cells. The utilization of [13C6]scyllo-inositol will help to elucidate the role of scyllo-inositol metabolism in healthy and diseased states. SignificanceScyllo-inositol is a cyclic sugar alcohol found predominantly in the human brain. Changes in its concentration are associated with different diseases, and scyllo-inositol has been investigated as a potential drug against Alzheimers disease in clinical trials. However, its metabolic fate in mammalian cells is not well understood. We report here a synthetic strategy to obtain [13C6]scyllo-inositol and demonstrate, through isotopic tracing, its incorporation into phosphatidylinositols in different human-derived cell lines. This new stable isotopic tracer enables the investigation of the biological role of scyllo-inositol in mammals and beyond. HighlightsO_LIConcise synthesis of [13C6]scyllo-inositol C_LIO_LI[13C6]scyllo-inositol uptake and response of endogenous inositol isomers studied in multiple cell lines C_LIO_LIUse of [13C6]scyllo-inositol as an isotopic tracer in metabolomics and lipidomics experiments C_LIO_LIEvidence for scyllo-inositol incorporation into phosphatidylinositol in mammalian cells C_LI

Matching journals

The top 8 journals account for 50% of the predicted probability mass.

1
Analytical Chemistry
205 papers in training set
Top 0.2%
12.4%
2
Journal of the American Chemical Society
199 papers in training set
Top 0.5%
10.5%
3
Nature Communications
4913 papers in training set
Top 22%
8.5%
4
ACS Chemical Biology
150 papers in training set
Top 0.1%
7.2%
5
Chemical Science
71 papers in training set
Top 0.3%
3.6%
6
Chemistry – A European Journal
13 papers in training set
Top 0.1%
3.6%
7
eLife
5422 papers in training set
Top 29%
3.1%
8
Scientific Reports
3102 papers in training set
Top 41%
3.1%
50% of probability mass above
9
Journal of Lipid Research
35 papers in training set
Top 0.1%
2.6%
10
Biochemistry
130 papers in training set
Top 0.5%
2.6%
11
Angewandte Chemie International Edition
81 papers in training set
Top 1%
2.4%
12
JACS Au
35 papers in training set
Top 0.2%
2.1%
13
Nature Chemical Biology
104 papers in training set
Top 1%
2.1%
14
Frontiers in Chemistry
14 papers in training set
Top 0.1%
1.9%
15
Metabolites
50 papers in training set
Top 0.4%
1.9%
16
Communications Chemistry
39 papers in training set
Top 0.2%
1.7%
17
Cell Chemical Biology
81 papers in training set
Top 2%
1.3%
18
ChemBioChem
50 papers in training set
Top 0.8%
1.2%
19
Proceedings of the National Academy of Sciences
2130 papers in training set
Top 37%
1.2%
20
iScience
1063 papers in training set
Top 23%
1.1%
21
Chemical Communications
24 papers in training set
Top 0.8%
1.1%
22
Journal of the American Society for Mass Spectrometry
33 papers in training set
Top 0.4%
0.9%
23
Cell Reports
1338 papers in training set
Top 30%
0.9%
24
Communications Biology
886 papers in training set
Top 18%
0.9%
25
PLOS ONE
4510 papers in training set
Top 66%
0.8%
26
Metabolomics
11 papers in training set
Top 0.4%
0.8%
27
Journal of Medicinal Chemistry
68 papers in training set
Top 1%
0.8%
28
International Journal of Molecular Sciences
453 papers in training set
Top 16%
0.7%
29
ACS Chemical Neuroscience
60 papers in training set
Top 3%
0.5%
30
Journal of Natural Products
11 papers in training set
Top 0.4%
0.5%