Back

Particle Swarm Optimization with Random Forest Surrogates Modelling for Rational Design of Antimicrobial Fluoride Toothpaste Formulations against Clinically Significant Oral Pathogens

ASUAI, C.; Whilliki, O.; Mayor, A.; Victory, D.; Imarah, O.; Asuai, A.; Irene, D.; Merit, I.; Hosni, H.; Khan, M. I.; Edwin, A. C.; Destiny, I. E.

2026-04-03 microbiology
10.64898/2026.04.02.716085 bioRxiv
Show abstract

To make effective antimicrobial toothpastes, you need to optimize many parts that work together. Creating new formulations the old-fashioned way takes a lot of time and money. This research formulates and substantiates a methodological framework that combines systematic antimicrobial susceptibility testing with Particle Swarm Optimization (PSO) to enhance toothpaste formulations against clinically significant oral pathogens. Using a D-optimal mixture design, we made 24 different toothpaste formulations by changing the type of fluoride (NaF, MFP, SnF2), the concentration of fluoride (1000-1500 ppm), the concentration of SLS (0.5-2.5%), the type of abrasive (silica, calcium carbonate, dicalcium phosphate), and the concentration of abrasive (10-30%). We used agar well diffusion and minimum inhibitory concentration (MIC) tests to see how well the drugs worked against Streptococcus mutans ATCC 25175, Porphyromonas gingivalis ATCC 33277, and Lactobacillus acidophilus ATCC 4356. A Random Forest surrogate model was trained on 120 experimental data points (24 formulations x 5 concentrations) and validated through 10-fold cross-validation. Multi-objective PSO was used to improve the effectiveness of antimicrobials, the availability of fluoride, and the cost of the formulation. Chosen PSO-predicted formulations underwent experimental validation. The antimicrobial activity changed a lot (p < 0.001) depending on the formulation parameters. The optimized formulation (sodium fluoride 1120 ppm, SLS 2.3%, hydrated silica 18%, pH 7.2) showed 28.4 {+/-} 1.2 mm of inhibition against S. mutans, 26.8 {+/-} 1.4 mm against P. gingivalis, and 24.2 {+/-} 1.1 mm against L. acidophilus. These were improvements of 18.5%, 22.3%, and 19.8%, respectively, over the best commercial comparator. Experimental validation corroborated PSO predictions with a mean absolute error of 5.2%. Multi-objective Optimization found Pareto-optimal formulations that let you choose based on trade-offs between effectiveness, safety, and cost. Combining systematic experimental design with PSO gives a tested framework for making rational toothpaste formulations. This method significantly lowers the amount of work needed for experiments while also allowing for the Optimization of multiple competing formulation goals.

Matching journals

The top 10 journals account for 50% of the predicted probability mass.

1
Antibiotics
32 papers in training set
Top 0.1%
15.0%
2
PLOS ONE
4510 papers in training set
Top 16%
10.9%
3
Scientific Reports
3102 papers in training set
Top 5%
10.5%
4
Frontiers in Microbiology
375 papers in training set
Top 3%
2.7%
5
Microbiology Spectrum
435 papers in training set
Top 1%
2.5%
6
International Journal of Molecular Sciences
453 papers in training set
Top 5%
2.2%
7
Antimicrobial Agents and Chemotherapy
167 papers in training set
Top 0.8%
2.2%
8
The American Journal of Tropical Medicine and Hygiene
60 papers in training set
Top 2%
2.0%
9
Applied and Environmental Microbiology
301 papers in training set
Top 1%
2.0%
10
Computational and Structural Biotechnology Journal
216 papers in training set
Top 4%
1.7%
50% of probability mass above
11
Journal of Microbiological Methods
11 papers in training set
Top 0.2%
1.5%
12
Microbiology
57 papers in training set
Top 0.8%
1.3%
13
eLife
5422 papers in training set
Top 48%
1.3%
14
Journal of Dental Research
13 papers in training set
Top 0.1%
1.0%
15
ACS Synthetic Biology
256 papers in training set
Top 2%
0.9%
16
PeerJ
261 papers in training set
Top 12%
0.9%
17
Pharmaceutics
21 papers in training set
Top 0.3%
0.9%
18
Journal of Medical Microbiology
20 papers in training set
Top 0.5%
0.9%
19
Biology Methods and Protocols
53 papers in training set
Top 2%
0.9%
20
FEMS Microbes
14 papers in training set
Top 0.3%
0.9%
21
Advanced Materials
53 papers in training set
Top 2%
0.8%
22
Molecular Pharmaceutics
16 papers in training set
Top 0.5%
0.8%
23
Nature Communications
4913 papers in training set
Top 60%
0.8%
24
RSC Advances
18 papers in training set
Top 1%
0.8%
25
Infection
15 papers in training set
Top 0.3%
0.8%
26
Biomacromolecules
25 papers in training set
Top 0.3%
0.8%
27
ACS Omega
90 papers in training set
Top 3%
0.8%
28
PLOS Computational Biology
1633 papers in training set
Top 23%
0.8%
29
Food & Function
12 papers in training set
Top 0.5%
0.8%
30
Journal of Visualized Experiments
30 papers in training set
Top 0.7%
0.8%