Back

Integrating GlycoSHIELD Modeling and DNA-PAINT SMLM to Map the Glycosylation-Dependent Distri-bution of the Na,K-ATPase

Stojcic, B.; Draczkowski, P.; Patrick, J.; Saeed, M.; Brismar, H.

2026-03-31 cell biology
10.64898/2026.03.27.714919 bioRxiv
Show abstract

The cell surface localization of the Na,K-ATPase (sodium pump) is required for maintaining transmembrane electrochemical gradients. While glycosylation of the {beta}1 subunit facilitates trafficking from the endoplasmic reticulum to the plasma membrane, its role in nanoscale surface organization is not characterized. This study employed GlycoSHIELD computational modeling and DNA-PAINT single-molecule localization microscopy (SMLM) to evaluate how N-glycans influence pump distribution. In-silico simulations indicated that N-glycans sequester the protein core, providing a steric shield that increases with structural complexity. To investigate this experimentally, glycosylation-deficient mutants (3NQ) were generated and confirmed via immunoblotting. Quantitative SMLM analysis of A498 cells demonstrated that wild-type pumps exhibit higher localization density and form larger (144 nm) and more frequent clusters than 3NQ mutants (109 nm). These results indicate that N-glycosylation promotes stable enzyme clustering, supporting a galectin-lattice mechanism of organization rather than steric repulsion.

Matching journals

The top 5 journals account for 50% of the predicted probability mass.

1
Biophysical Journal
545 papers in training set
Top 0.3%
14.2%
2
eLife
5422 papers in training set
Top 3%
14.2%
3
Advanced Science
249 papers in training set
Top 0.8%
12.5%
4
Nature Communications
4913 papers in training set
Top 29%
6.3%
5
Journal of Chemical Information and Modeling
207 papers in training set
Top 1%
4.3%
50% of probability mass above
6
iScience
1063 papers in training set
Top 4%
3.9%
7
Scientific Reports
3102 papers in training set
Top 46%
2.6%
8
Proceedings of the National Academy of Sciences
2130 papers in training set
Top 28%
2.0%
9
Cell Reports
1338 papers in training set
Top 24%
1.7%
10
Angewandte Chemie International Edition
81 papers in training set
Top 2%
1.7%
11
Nano Letters
63 papers in training set
Top 2%
1.7%
12
ACS Chemical Neuroscience
60 papers in training set
Top 1%
1.6%
13
ACS Nano
99 papers in training set
Top 2%
1.6%
14
Journal of Molecular Biology
217 papers in training set
Top 2%
1.6%
15
ACS Central Science
66 papers in training set
Top 1%
1.5%
16
PLOS Biology
408 papers in training set
Top 12%
1.5%
17
Frontiers in Cell and Developmental Biology
218 papers in training set
Top 5%
1.5%
18
Communications Biology
886 papers in training set
Top 11%
1.5%
19
Science Advances
1098 papers in training set
Top 20%
1.5%
20
PLOS ONE
4510 papers in training set
Top 61%
1.2%
21
Structure
175 papers in training set
Top 2%
1.2%
22
PLOS Computational Biology
1633 papers in training set
Top 20%
1.2%
23
Journal of Biological Chemistry
641 papers in training set
Top 3%
1.2%
24
Journal of Structural Biology
58 papers in training set
Top 1%
0.9%
25
Journal of Cell Biology
333 papers in training set
Top 4%
0.7%
26
Communications Chemistry
39 papers in training set
Top 2%
0.6%