Back

Liquid Phase Backscattered Scanning Electron Microscopy of Bacillus subtilis Spores

Bromley, J.; Pedrazo-Tardajos, A.; Meng, Y.; Spink, M. C.; Ozkaya, D.; Ruoff, R. S.; Christie, G.; Kirkland, A. I.; Kim, J. S.

2026-03-25 microbiology
10.64898/2026.03.24.713888 bioRxiv
Show abstract

Backscattered electron scanning electron microscopy (BSE-SEM) provides compositional image contrast but has found limited application to biological samples due to the low atomic number difference between constituent elements, the thickness of the surrounding environment, and the need for complex sample preparation. Here, we demonstrate the use of room temperature liquid phase BSE-SEM (LPBSEM) for imaging Bacillus subtilis spores encapsulated in graphene liquid cells, preserving native hydration and reducing the thickness of the sample environment. This approach eliminates the need for staining and enables high-contrast visualisation of subcellular structures. Distinct structural layers within B. subtilis spores have been observed with a contrast similar to conventional thin-section transmission electron microscopy but without the need for sample preparation that potentially compromises sample integrity. We further investigate the influence of beam energy on the interaction volume depth and image contrast and propose optimal conditions for subsurface visualisation. Monte Carlo simulations have been used to validate our experimental observations and provide a quantitative framework for understanding BSE generation from hydrated, low atomic number specimens.

Matching journals

The top 4 journals account for 50% of the predicted probability mass.

1
Journal of Microscopy
18 papers in training set
Top 0.1%
34.3%
2
Scientific Reports
3102 papers in training set
Top 11%
7.5%
3
PLOS ONE
4510 papers in training set
Top 24%
7.1%
4
Optica
25 papers in training set
Top 0.2%
6.6%
50% of probability mass above
5
eLife
5422 papers in training set
Top 33%
2.5%
6
Communications Biology
886 papers in training set
Top 5%
2.2%
7
Biomedical Optics Express
84 papers in training set
Top 0.6%
2.0%
8
Journal of Structural Biology
58 papers in training set
Top 0.6%
2.0%
9
mSphere
281 papers in training set
Top 3%
2.0%
10
Nanoscale
39 papers in training set
Top 0.1%
1.9%
11
Optics Express
23 papers in training set
Top 0.2%
1.8%
12
iScience
1063 papers in training set
Top 17%
1.5%
13
Nature Communications
4913 papers in training set
Top 53%
1.5%
14
ACS Photonics
13 papers in training set
Top 0.3%
1.4%
15
ACS Applied Materials & Interfaces
39 papers in training set
Top 0.7%
1.2%
16
Journal of Visualized Experiments
30 papers in training set
Top 0.4%
1.2%
17
Environmental Pollution
35 papers in training set
Top 2%
1.0%
18
Advanced Biology
29 papers in training set
Top 0.8%
0.9%
19
Cell Reports Methods
141 papers in training set
Top 4%
0.9%
20
Light: Science & Applications
16 papers in training set
Top 0.5%
0.9%
21
Nano Letters
63 papers in training set
Top 2%
0.8%
22
Proceedings of the National Academy of Sciences
2130 papers in training set
Top 42%
0.8%
23
The Analyst
15 papers in training set
Top 0.5%
0.8%
24
Nature Methods
336 papers in training set
Top 6%
0.7%
25
IUCrJ
29 papers in training set
Top 0.3%
0.7%
26
ACS Nano
99 papers in training set
Top 4%
0.7%
27
Frontiers in Plant Science
240 papers in training set
Top 5%
0.7%
28
mBio
750 papers in training set
Top 12%
0.7%
29
Frontiers in Microbiology
375 papers in training set
Top 10%
0.5%