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Human ancestors interbred with two distinct populations of distant relatives

Rogers, A. R.; Islam, M. T.; Brand, C. M.; Webster, T. H.

2026-03-23 evolutionary biology
10.64898/2026.03.22.713509 bioRxiv
Show abstract

Ancient DNA has shown that a distantly-related "superarchaic" population interbred first with the ancestors of Neanderthals and Denisovans and later with Denisovans themselves. Other work has shown that a superarchaic population interbred with the African ancestors of all modern humans. But it is not yet clear whether these events involved the same superarchaic population. Here, we use the distribution of derived alleles among populations to evaluate hypotheses about superarchaics and their relationship to other hominins of the Pleistocene and Holocene. We find evidence for at least two distinct superarchaic populations. The one contributing to archaic Eurasian populations (Denisovans and Neanderthal-Denisovan ancestors) diverged earlier from the human lineage than did the one contributing to early moderns in Africa. These findings reveal previously unrecognized structure among hominin populations of the Pleistocene.

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