Cardiolipin constrains lipid unsaturation during anaerobic adaptation in Escherichia coli

Membrane lipids play a crucial role in cellular adaptation; though their specific functions in bacterial adaptation to oxygen limitation are not yet fully elucidated. Cardiolipin (CL), a signature phospholipid in energy-transducing membranes and a key organizer of mitochondrial respiration, has an unclear role in bacterial anaerobic physiology. Here, genetics, quantitative lipidomics and proteomics, enzymology, and fluorescence imaging were combined to explore how CL facilitates hypoxia adaptation in Escherichia coli. ClsA emerged as the predominant CL synthase under anaerobic conditions, and CL deficiency selectively impaired nitrate-dependent growth, while fermentation and fumarate respiration remained largely unaffected. CL depletion triggered extensive lipidome rewiring during the aerobic-to-anaerobic transition, including increased levels of phosphatidylglycerol, phosphatidic acid, and diacylglycerol, along with a broad enrichment of more unsaturated lipid species. In parallel, proteome remodeling linked CL loss to reduced abundance of proteins involved in anoxic respiration and nitrosative stress management, alongside the induction of membrane stress responses. Interestingly, CL deficiency did not markedly affect cell morphology, nor the spatial distribution or stability of respiratory complexes. This suggests a specialized role in optimizing membrane protein function rather than providing generic structural support. Wild-type lipidome profiling further showed that anaerobiosis induces a shift of lipid species toward higher unsaturation, with only modest class-level changes. Collectively, these results connect lipid remodeling to functional outcomes in vivo, offering mechanistic insights into how bacteria adapt their membranes to maintain energy conservation in fluctuating environments.