Back

In Silico Screening of Indian Medicinal Herb Compounds for Intestinal α-Glucosidase Inhibition with ADMET and Toxicity Assessment for Postprandial Glucose Management in Type-2 Diabetes

Roy, D. A. C.; GHOSH, D. I.

2026-03-03 bioinformatics
10.64898/2026.03.01.708840 bioRxiv
Show abstract

Postprandial hyperglycemia is a major concern in type 2 diabetes, and inhibition of intestinal -glucosidases [maltase-glucoamylase (MGAM)] is an established method for controlling post-meal glucose excursions. In this study, we conducted an in-silico screening of phytochemicals from different well-known medicinal plants (Withania somnifera, Rauwolfia serpentina, Curcuma longa, and Camellia sinensis) against MGAM, using the clinically approved inhibitor miglitol as reference for docking protocol validation. Molecular docking revealed that miglitol binds to MGAM with a binding energy of -6.86kcal/mol and an RMSD of 1.04 (with co-crystal structure; PBD ID:3L4W); however, several phytochemicals exhibited binding affinities equal to or stronger than miglitol. Among these, Withanolide B (-9.25kcal/mol) and Withanone (-7.57kcal/mol) from Withania somnifera showed the highest predicted affinities, indicating robust engagement of the MGAM catalytic pocket. Rauwolfia serpentina alkaloids such as yohimbine (-8.50kcal/mol) and raubasine (-8.46kcal/mol) also displayed strong binding energies, whereas curcuminoids (curcumin -6.36kcal/mol; deoxycurcumin -6.35kcal/mol) and tea catechins (e.g., epicatechin gallate -6.85 kcal/mol) demonstrated moderate affinity. Interaction analysis showed that top-ranking compounds formed extensive hydrogen-bonding and hydrophobic interactions with key catalytic residues of MGAM, suggesting stable occupancy of the active site. In-silico ADME profiling predicted favorable gastrointestinal absorption for lead phytochemicals, supporting their potential for oral intestinal action. Collectively, these results identify plant-derived ligands with binding energies comparable to or exceeding that of miglitol, highlighting Withania somnifera withanolides as priority candidates for experimental validation in enzyme inhibition assays and glucose tolerance models, and providing a focused set of natural MGAM inhibitors for further translational investigation in postprandial glucose control.

Matching journals

The top 12 journals account for 50% of the predicted probability mass.

1
PLOS ONE
4510 papers in training set
Top 21%
8.5%
2
Acta Pharmaceutica Sinica B
11 papers in training set
Top 0.1%
6.5%
3
Scientific Reports
3102 papers in training set
Top 17%
6.4%
4
Advanced Science
249 papers in training set
Top 3%
6.4%
5
Molecules
37 papers in training set
Top 0.2%
3.6%
6
Genomics, Proteomics & Bioinformatics
171 papers in training set
Top 2%
3.6%
7
ACS Omega
90 papers in training set
Top 0.5%
3.6%
8
Journal of Medicinal Chemistry
68 papers in training set
Top 0.4%
3.1%
9
International Journal of Biological Macromolecules
65 papers in training set
Top 1.0%
2.5%
10
eLife
5422 papers in training set
Top 33%
2.5%
11
Briefings in Bioinformatics
326 papers in training set
Top 3%
2.1%
12
Nature Communications
4913 papers in training set
Top 48%
1.9%
50% of probability mass above
13
RSC Advances
18 papers in training set
Top 0.4%
1.9%
14
ACS Pharmacology & Translational Science
40 papers in training set
Top 0.3%
1.8%
15
Life Sciences
25 papers in training set
Top 0.5%
1.8%
16
Journal of Chemical Information and Modeling
207 papers in training set
Top 2%
1.8%
17
Pharmaceuticals
33 papers in training set
Top 0.6%
1.7%
18
International Journal of Molecular Sciences
453 papers in training set
Top 8%
1.7%
19
Communications Chemistry
39 papers in training set
Top 0.3%
1.5%
20
Advanced Therapeutics
15 papers in training set
Top 0.2%
1.5%
21
Horticulture Research
43 papers in training set
Top 1%
1.5%
22
Clinical and Translational Science
21 papers in training set
Top 0.5%
1.4%
23
Journal of Translational Medicine
46 papers in training set
Top 1%
1.2%
24
Communications Biology
886 papers in training set
Top 16%
1.0%
25
Biochimie
23 papers in training set
Top 0.2%
0.9%
26
Computational and Structural Biotechnology Journal
216 papers in training set
Top 8%
0.8%
27
Food Chemistry
12 papers in training set
Top 0.4%
0.8%
28
Chemical Communications
24 papers in training set
Top 1.0%
0.8%
29
Bioorganic & Medicinal Chemistry Letters
10 papers in training set
Top 0.3%
0.8%
30
Journal of Natural Products
11 papers in training set
Top 0.3%
0.7%