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Understanding Coral Health from Reactor Engineering Perspective: Multiphysics Modeling of Coral - Environment Interactions

Zhuo, H.; Xiao, F. L.; Chen, X. D.; Xiao, J.

2026-01-23 systems biology
10.64898/2026.01.21.700759 bioRxiv
Show abstract

Coral, as a bioreactor, has to continuously interact with surrounding environment to maintain a healthy state. A multi-physics reaction engineering model has been developed to capture this interaction. The coral interior is modeled as interconnected reaction units respectively for photosynthesis, respiration, and calcification, whose reaction kinetics are influenced by environmental fluctuations. Coupling between coral and environment is realized by bi-directional mass transfer at the coral-seawater interface, with consideration of the unique flow fields induced by ciliary beating. By resorting to this comprehensive model, we discover that ciliary beating demonstrates distinctively different diurnal and nocturnal functions. During daytime, beating can help reduce photosynthetic oxygen accumulation to prevent hyperoxia-induced mortality, while enhancing carbon dioxide uptake efficiency to promote nutrient production. At night, however, beating promotes oxygen acquisition for adequate respiration, while expelling carbon dioxide to inhibit symbiotic destruction under acidic stress. The model further enables mechanistic analysis of the detrimental impact of climate change on coral health, where the influences from two key factors (i.e., temperature and CO2 level) can be decoupled. Its interesting to find out that the elevated temperature plays a dominant role during daytime, while at night the coral is dominantly influenced by rising CO2 level.

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