Characterization of novel cytoplasmic roles for the N-terminal methyltransferase NRMT1

N-terminal methylation of proteins by the trimethylase NRMT1 plays important roles in oncogenesis, development, and aging. As N-terminal methylation has frequently been shown to regulate protein-DNA interactions, and many NRMT1 substrates are transcription factors or regulators of chromatin structure, previous research has focused on how transcriptional regulation by NRMT1 affects cell growth and differentiation. However, we have recently identified a new, cytoplasmic role for NRMT1, inhibiting the eukaryotic elongation factor 1 alpha (eEF1A) methyltransferase METTL13, which indicates NRMT1 could also be acting as a translational regulator. Here we further explore NRMT1 cytoplasmic functions and show that, unlike previously thought, NRMT1 can methylate substrates in the cytoplasm. We also show that while many of these substrates remain bound to NRMT1, it can also interact with a number of non-target ribosomal proteins and proteins associated with the endoplasmic reticulum (ER). To confirm NRMT1 interaction with the ribosome, we performed polysome profiling, which showed a portion of NRMT1 co-migrates with the 40S and 60S subunits but not with actively translating polysomes, indicating NRMT1 may play an early role in translation. To see if NRMT1 was affecting target mRNA selection of ribosomes, we also performed ribosome-sequencing experiments in proliferating and differentiating C2C12 mouse myoblasts. These results show a striking upregulation of translation of soluble proteins with NRMT1 loss and corresponding decrease in translation of transmembrane and signal sequence-containing proteins. We now propose a model where NRMT1 regulates the translation of transmembrane and secreted proteins by facilitating interactions between the ribosome and the ER.