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A Comprehensive Treatment-Induced Resistance Atlas of Glioblastoma Reveals a Fibrotic Niche Shielding the Tumor from Immunotherapy

Wang, F.; Huang, R.; Ling, H.; Bai, Y.; Yang, C.; Zhao, G.; Wu, X.; Cao, W.; Lu, Y.; Zhang, Y.; Lu, D.; Qiu, Y.; Zhang, J.; Gao, B.; Ma, C.; Dang, H.; Zhang, Y.; Yang, Y.; Sun, T.; Chen, Z.; Wang, Z.

2025-12-29 cancer biology
10.64898/2025.12.25.696471 bioRxiv
Show abstract

2Therapeutic resistance in IDH-wildtype glioblastoma (GBM) is driven by profound cellular plasticity and a structured immunosuppressive tumor microenvironment (TME). Here, we present the Glioblastoma Resistance Insights from Treatment Atlas (GRIT-Atlas), the most comprehensive single-cell resource to date, encompassing nearly one million cells from 296 samples across primary and recurrent cohorts, including those treated with immune checkpoint blockade (ICB) and anti-angiogenic combination therapy. We identify a convergent evolutionary trajectory where therapeutic pressure selects for a specific malignant state, cNMF7 (MES-like), characterized by a synergy of hypoxia, stemness, and inflammatory signaling. Integrating spatial transcriptomics across 48 patient sections, we define a "Spatial Resistance Triad"--a core functional unit composed of cNMF7 cells, differentiation-arrested E-MDSCs, and Type VI Collagen-secreting myCAFs. This triad specifically colonizes the hypoxic microvascular proliferation (MVP) and pseudopalisading necrosis (PAN) niches. Mechanistically, we show that myCAFs act as stromal architects, constructing a fibrotic scaffold through a Collagen/Fibronectin-CD44 signaling axis. This spatial infrastructure not only physically excludes cytotoxic T cells but also provides essential cues to sustain malignant plasticity and myeloid-mediated immunosuppression. Our findings across seven independent cohorts and pan-cancer validation underscore the clinical significance of this axis in driving immunotherapy failure. Collectively, the GRIT-Atlas provides a blueprint for dismantling the "immunosuppressive sanctuaries" of GBM to overcome therapeutic resistance.

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