Ecological and Genetic Determinants of Essential Oil Diversity in Mediterranean Thymus

The Mediterranean Basin is a hotspot of plant diversity, with many species producing aromatic essential oils (EOs) that mediate ecological interactions and stress responses. Within Lamiaceae, the genus Thymus shows remarkable chemical variability, yet high intraspecific EO variation often limits its taxonomic resolution. We investigated EO composition, genetic structure, and environmental influences across 39 populations of Thymus sect. Mastichina in the Iberian Peninsula, using GC-MS alongside soil and climatic data to assess drivers of chemical variation and refine taxonomic characterization. We identified 14 major EO compounds, dominated by oxygenated monoterpenes. Most populations exhibited 1,8-cineole-rich chemotypes, yet seven populations showed linalool dominance, and multiple chemotypes often co-occurred within the same populations, revealing high intrapopulation chemical diversity. Minor compounds, including camphor, borneol, and camphene, varied among genetic clusters and were significantly correlated with temperature and precipitation gradients. Differences in EO composition were also detected between ploidy levels and genetic groups, although the major compounds (1,8-cineole and linalool) remained relatively consistent, indicating both conserved and locally adaptive chemical traits. These findings suggest that EO diversity in Thymus sect. Mastichina arises from a complex interplay of environmental conditions, genetic background, and ploidy. Integrating chemical, genetic, and ecological data provides a robust framework for understanding the evolutionary and ecological drivers of EO variation in Mediterranean aromatic plants, with implications for taxonomy, conservation, and the study of adaptive chemical traits.