Back

The Association Between Oral Microbiota and Chronic Obstructive Pulmonary Disease: An Integrated Study of Genetic Causal Inference and Bioinformatics Analysis

Wei, Z.-f.; Huang, Y.-t.; Wuzhang, J.-p.; Zhang, X.-x.

2025-12-02 respiratory medicine
10.64898/2025.12.01.25341371 medRxiv
Show abstract

BackgroundChronic obstructive pulmonary disease (COPD) is the third leading cause of global mortality. Emerging evidence suggests the oral microbiome may contribute to COPD progression, though causal relationships remain elusive. MethodsUsing bidirectional Mendelian randomization (MR) on East Asian genome-wide association study (GWAS) summary data, we assessed causal links between oral microbial taxa and COPD risk. Subsequently, hub genes in COPD bulk RNA sequencing data were identified by integrating the Protein-Protein Interaction (PPI) network with machine learning, followed by target validation using single-cell RNA sequencing, immune infiltration analysis, and molecular docking. ResultsForward MR identified 43 taxa associated with COPD, primarily from genera such as Fusobacterium, Prevotella, and Streptococcus. Reverse MR detected 73 taxa affected by COPD, mainly involving Campylobacter_A, Rothia, and Streptococcus. Through the PPI network, machine learning screening, and multi-omics analysis validation, MPDZ emerged as a key hub gene, upregulated in Ciliated and Endothelial cells during early stages of COPD and linked to immune dysregulation. Molecular docking revealed six candidate drugs with strong binding affinity to MPDZ. ConclusionOur study provides insights for the development of personalized treatment strategies for COPD and offers preliminary candidate targets and drugs for future drug development.

Matching journals

The top 6 journals account for 50% of the predicted probability mass.

1
Respiratory Research
19 papers in training set
Top 0.1%
18.7%
2
European Respiratory Journal
54 papers in training set
Top 0.1%
12.5%
3
PLOS ONE
4510 papers in training set
Top 22%
8.4%
4
Genomics
60 papers in training set
Top 0.2%
4.3%
5
Journal of Translational Medicine
46 papers in training set
Top 0.2%
3.6%
6
ERJ Open Research
44 papers in training set
Top 0.3%
3.6%
50% of probability mass above
7
Clinical and Translational Medicine
30 papers in training set
Top 0.1%
3.6%
8
BMJ Open Respiratory Research
32 papers in training set
Top 0.2%
3.6%
9
American Journal of Respiratory and Critical Care Medicine
39 papers in training set
Top 0.3%
3.3%
10
Scientific Reports
3102 papers in training set
Top 41%
3.1%
11
Frontiers in Pharmacology
100 papers in training set
Top 1%
2.4%
12
Frontiers in Medicine
113 papers in training set
Top 3%
2.1%
13
American Journal of Respiratory Cell and Molecular Biology
38 papers in training set
Top 0.4%
1.9%
14
Frontiers in Molecular Biosciences
100 papers in training set
Top 2%
1.7%
15
Signal Transduction and Targeted Therapy
29 papers in training set
Top 0.7%
1.7%
16
International Journal of Epidemiology
74 papers in training set
Top 2%
1.5%
17
Journal of Cystic Fibrosis
15 papers in training set
Top 0.1%
1.3%
18
Medicine
30 papers in training set
Top 1%
1.3%
19
Critical Care
14 papers in training set
Top 0.4%
1.2%
20
Clinical Immunology
21 papers in training set
Top 0.4%
1.1%
21
Allergy
23 papers in training set
Top 0.5%
0.9%
22
Human Molecular Genetics
130 papers in training set
Top 3%
0.9%
23
Annals of Translational Medicine
17 papers in training set
Top 1%
0.8%
24
Pediatric Pulmonology
14 papers in training set
Top 0.4%
0.7%
25
eBioMedicine
130 papers in training set
Top 4%
0.7%
26
Frontiers in Cell and Developmental Biology
218 papers in training set
Top 10%
0.7%
27
Medical Research Archives
11 papers in training set
Top 0.7%
0.7%
28
Environmental Research
46 papers in training set
Top 2%
0.6%
29
BMC Medicine
163 papers in training set
Top 8%
0.6%
30
Journal of Allergy and Clinical Immunology
25 papers in training set
Top 1.0%
0.6%