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MetroNome - a visual data exploration platform for integrating human genotypic and phenotypic data across diseases

Stolte, C.; Shi, K.; Lapchyk, N.; Novod, N.; Abhyankar, A.; Ostrow, L. W.; Phatnani, H.; Bloom, T.

2019-09-14 bioinformatics
10.1101/769646 bioRxiv
Show abstract

MetroNome is a web-based visual data exploration platform which integrates de-identified genomic, transcriptomic, and phenotypic data sets. Users can define and compare cohorts constructed from multimodal data and share the data and analyses with outside tools. MetroNomes interactive visualization and analysis tools allow researchers to quickly form and explore novel hypotheses. The deidentified data is linked back to the source biosample inventories in multiple biobanks, enabling researchers to further investigate new ideas using the most relevant samples.

Matching journals

The top 8 journals account for 50% of the predicted probability mass.

1
BMC Bioinformatics
○ 457 papers in training set
Top 0.7%
9.8%
Similar papers in this journal
2
Bioinformatics
◐ 1204 papers in training set
Top 3%
9.8%
Similar papers in this journal
3
PLOS ONE
● 5266 papers in training set
Top 22%
7.3%
Similar papers in this journal
4
Bioinformatics Advances
◐ 203 papers in training set
Top 0.9%
5.5%
Similar papers in this journal
5
Database
◐ 61 papers in training set
Top 0.1%
5.2%
Similar papers in this journal
6
Nucleic Acids Research
◐ 1281 papers in training set
Top 4%
5.2%
7
PLOS Computational Biology
● 1863 papers in training set
Top 8%
4.3%
8
GigaScience
◐ 212 papers in training set
Top 0.9%
4.1%
50% of probability mass above
9
Journal of the American Medical Informatics Association
◐ 71 papers in training set
Top 1%
2.8%
10
Scientific Data
○ 209 papers in training set
Top 0.9%
2.7%
11
Journal of Open Source Software
● 25 papers in training set
Top 0.1%
2.7%
12
JAMIA Open
◐ 42 papers in training set
Top 0.7%
2.5%
13
BMC Medical Genomics
○ 50 papers in training set
Top 0.3%
2.1%
14
STAR Protocols
○ 18 papers in training set
Top 0.2%
1.7%
15
NAR Genomics and Bioinformatics
◐ 242 papers in training set
Top 3%
1.5%
16
SoftwareX
○ 15 papers in training set
Top 0.1%
1.4%
17
Patterns
○ 78 papers in training set
Top 2%
1.4%
18
Nature Methods
○ 385 papers in training set
Top 5%
1.3%
19
Frontiers in Genetics
○ 230 papers in training set
Top 3%
1.3%
20
Journal of Bioinformatics and Systems Biology
○ 15 papers in training set
Top 0.1%
1.3%
21
Nature Communications
○ 5641 papers in training set
Top 48%
1.3%
22
Genome Biology
○ 637 papers in training set
Top 7%
1.1%
23
Journal of Molecular Biology
○ 232 papers in training set
Top 3%
1.1%
24
Scientific Reports
○ 3612 papers in training set
Top 69%
1.0%
25
Human Mutation
○ 34 papers in training set
Top 0.4%
1.0%
26
eLife
● 5828 papers in training set
Top 66%
0.8%
27
iScience
○ 1154 papers in training set
Top 35%
0.8%
28
JCO Clinical Cancer Informatics
● 22 papers in training set
Top 0.7%
0.8%
29
Disease Models & Mechanisms
139 papers in training set
Top 3%
0.8%
30
Briefings in Bioinformatics
◐ 354 papers in training set
Top 7%
0.8%

"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.