Does microbiome-associated disease affect the inter-subject heterogeneity of human microbiome?
Ma, Z.; Li, L.
Show abstract
Space is a critical and also challenging frontier in human microbiome research. It has been argued that lack of consideration of scales beyond individual and ignoring of microbe dispersal are two crucial roadblocks in preventing deep understanding of the heterogeneity of human microbiome. Assessing and interpreting the spatial distribution (dispersal) of microbes explicitly are particularly challenging, but implicit approaches such as Taylors power law (TPL) can still be effective and offer significant insights into the heterogeneity in abundance and distribution of human microbiomes. Here, we investigate the relationship between human microbiome-associated diseases (MADs) and the inter-subject microbiome heterogeneity, or heterogeneity-disease relationship (HDR), by harnessing the power of TPL extensions and by analyzing a big dataset of 25 MAD studies covering all five major microbiome habitats and majority of the high-profile MADs including obesity and diabetes. Our HDR analysis revealed that in approximately 10%-17% of the cases, disease effects were significant--the healthy and diseased cohorts exhibited statistically significant differences. In majority of the MAD cases, the microbiome was sufficiently resilient to endure the disturbances of MADs. Furthermore, comparative analysis with traditional DDR (diversity-disease relationship) results is presented. We postulate that HDR reveals evolutionary characteristics because it utilizes the TPL parameter that implicitly characterizes spatial behavior (dispersion), which is primarily shaped by microbe-host co-evolution and is more robust against disturbances including diseases, while diversity in DDR analysis is primarily an ecological-scale characteristic and is less robust against diseases. Nevertheless, both HDR and DDR cross-verified remarkable resilience of human microbiomes against MADs.\n\nImportanceIt has been argued that lack of consideration of scales beyond individual and ignoring of microbe dispersal are two crucial roadblocks in preventing deep understanding of the heterogeneity of human microbiome. Assessing and interpreting the spatial distribution (dispersal) of microbes explicitly are particularly challenging, but implicit approaches such as Taylors power law (TPL) can still be effective. Here, we investigate the relationship between human microbiome-associated diseases (MADs) and the inter-subject microbiome heterogeneity, or heterogeneity-disease relationship (HDR), by harnessing the power of TPL extensions and by analyzing a big dataset of 25 MAD studies covering all five major microbiome habitats and majority of the high-profile MADs including obesity and diabetes. We postulate that HDR reveals evolutionary characteristics because it utilizes the TPL parameter that implicitly characterizes spatial behavior (dispersion), which is primarily shaped by microbe-host co-evolution and is more robust against disturbances including diseases than the traditional diversity-disease relationship (DDR).
Matching journals
The top 7 journals account for 50% of the predicted probability mass.
Similar papers in this journal
- Degrees of compositional shift in tree communities vary along a gradient of temperature change rates over one decade: Application of an individual-based temporal beta diversity concept 92%
- Shotgun metagenomics of soil invertebrate communities reflects taxonomy, biomass and reference genome properties 91%
- Understanding the mechanisms underlying microbiota variation in wild tick populations 91%
Similar papers in this journal
- Human reproductive system microbiomes exhibited significantly different heterogeneity scaling with gut microbiome, but the intra-system scaling is invariant 98%
- Food web aggregation: effects on key positions 92%
- Linked networks reveal dual roles of insect dispersal and species sorting for bacterial communities in flowers 91%
Similar papers in this journal
- Investigation of microbial community interactions between lake Washington methanotrophs using genome-scale metabolic modeling 92%
- Analysis of 50 years of coral disease research visualized through the scope of network theory 91%
- Iroki: automatic customization and visualization of phylogenetic trees 91%
Similar papers in this journal
- Association of Body Index with Fecal Microbiome in Children Cohorts with Ethnic-Geographic Factor Interaction: Accurately Using a Bayesian Zero-inflated Negative Binomial Regression Model 93%
- A mixed model approach for estimating drivers of microbiota community composition and differential taxonomic abundance 92%
- Contrasting biogeographic patterns of bacterial and archaeal diversity in the top- and subsoils of temperate grasslands 91%
"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.