Back

ATG13 dynamics in non-selective autophagy and mitophagy: insights from live imaging studies and mathematical modelling.

Dalle Pezze, P.; Karanasios, E.; Kandia, V.; Manifava, M.; Walker, S. A.; Gambardella Le Novere, N.; Ktistakis, N. T.

2019-09-10 systems biology
10.1101/370114 bioRxiv
Show abstract

During autophagy, the ULK complex nucleates autophagic precursors which give rise to autophagosomes. We analysed by live imaging and mathematical modelling translocation of ATG13 (part of ULK complex) to autophagic puncta in starvation-induced autophagy and ivermectin-induced mitophagy. In non-selective autophagy, the intensity and duration of ATG13 translocation approximated a normal distribution whereas wortmannin reduced this and shifted to a log-normal distribution. During mitophagy, multiple translocations of ATG13, with increasing time between peaks were observed. We hypothesised that these multiple translocations arise because engulfment of mitochondrial fragments requires successive nucleations of multiple phagophores on the same target, and a mathematical model based on this idea reproduced the oscillatory behaviour. Significantly, model and experimental data were also in agreement that the number of ATG13 translocations is directly proportional to the diameter of the targeted mitochondrial fragments. Our data provide novel insights into the early dynamics of selective and non-selective autophagy.

Matching journals

The top 4 journals account for 50% of the predicted probability mass.

1
Autophagy
32 papers in training set
Top 0.1%
22.0%
2
PLOS Computational Biology
1633 papers in training set
Top 0.8%
22.0%
3
iScience
1063 papers in training set
Top 4%
3.9%
4
Journal of The Royal Society Interface
189 papers in training set
Top 1%
3.9%
50% of probability mass above
5
Molecular Biology of the Cell
272 papers in training set
Top 0.7%
3.5%
6
Journal of Cell Science
353 papers in training set
Top 0.5%
3.5%
7
Scientific Reports
3102 papers in training set
Top 39%
3.5%
8
eLife
5422 papers in training set
Top 27%
3.5%
9
Nature Communications
4913 papers in training set
Top 45%
2.5%
10
EMBO reports
136 papers in training set
Top 2%
2.0%
11
International Journal of Molecular Sciences
453 papers in training set
Top 8%
1.7%
12
Journal of Cell Biology
333 papers in training set
Top 2%
1.6%
13
Cells
232 papers in training set
Top 3%
1.6%
14
Frontiers in Cell and Developmental Biology
218 papers in training set
Top 6%
1.3%
15
Biology Open
130 papers in training set
Top 2%
1.2%
16
Journal of Theoretical Biology
144 papers in training set
Top 1%
1.1%
17
Cell Reports
1338 papers in training set
Top 29%
1.1%
18
Communications Biology
886 papers in training set
Top 17%
0.9%
19
Frontiers in Physiology
93 papers in training set
Top 5%
0.9%
20
Frontiers in Bioengineering and Biotechnology
88 papers in training set
Top 3%
0.8%
21
npj Systems Biology and Applications
99 papers in training set
Top 3%
0.7%
22
Royal Society Open Science
193 papers in training set
Top 5%
0.7%
23
Cellular and Molecular Life Sciences
84 papers in training set
Top 0.9%
0.7%
24
Frontiers in Molecular Biosciences
100 papers in training set
Top 6%
0.6%
25
Molecular Systems Biology
142 papers in training set
Top 2%
0.6%