Back

Harnessing artificial intelligence to automate environmental predictions

Malhotra, A.; Forbes, B.; Gary, S. F.; Goldman, A. E.; Waterman, B. R.; Garayburu-Caruso, V.; Fluet-Chouinard, E.; Mehan, S.; Bruen, M.; Taylor, M.; Ardon, M.; Cardenas, M. B.; Dodds, W. K.; Lonborg, C.; McDowell, W. H.; Moustapha, M.; Myers-Pigg, A. N.; Regier, P.; Rubin, T.; Song, H.; Stewart, R. D.; Villa, J.; Ward, N. D.; Scheibe, T. D.; Stegen, J. C.

2025-11-07 ecology
10.1101/2025.11.06.684583 bioRxiv
Show abstract

Predicting heterogeneous and non-linear processes remains a fundamental challenge in Earth sciences. Here, we present an artificial intelligence (AI)-guided framework that iteratively combines predictive modeling with targeted field sampling to rapidly improve environmental predictions. We demonstrate our workflow by predicting oxygen consumption, a key process of stream metabolism, across the contiguous United States (CONUS). Our approach consisted of 18 iterative loops of measurements and models, combining distributed participatory field sampling, lab analysis, automated machine learning (ML) predictions, and error and distinctiveness analyses to autonomously guide the next sampling at optimal site locations. Through our approach, we increased the predictive power of sediment oxygen consumption across CONUS by over fifteenfold between the first and last iteration. Relative to our last sampling iteration, our first sampling missed sites with high rates and underestimated median oxygen consumption rates by 68%. In addition to identifying areas of high oxygen consumption rates, iterations enabled refinement of laboratory and data handling methods, and engagement with a broad community of field researchers. We conclude that AI-guided iterative loops between targeted sampling and predictive modeling are a powerful and efficient approach for improving predictions of heterogeneous environmental processes.

Matching journals

The top 9 journals account for 50% of the predicted probability mass.

1
Communications Earth & Environment
14 papers in training set
Top 0.1%
12.7%
2
Nature Communications
5641 papers in training set
Top 14%
12.4%
3
Scientific Reports
3612 papers in training set
Top 17%
5.4%
4
PLOS Computational Biology
1863 papers in training set
Top 9%
4.0%
5
Science of The Total Environment
186 papers in training set
Top 1%
4.0%
6
Environmental Health Perspectives
17 papers in training set
Top 0.1%
4.0%
7
Nature Ecology & Evolution
113 papers in training set
Top 0.6%
3.2%
8
iScience
1154 papers in training set
Top 9%
2.7%
9
Proceedings of the National Academy of Sciences
2444 papers in training set
Top 20%
2.7%
50% of probability mass above
10
Environmental Science & Technology
64 papers in training set
Top 0.4%
2.7%
11
PLOS ONE
5266 papers in training set
Top 41%
2.6%
12
Environmental Science & Technology Letters
21 papers in training set
Top 0.1%
2.6%
13
ISME Communications
120 papers in training set
Top 1%
2.4%
14
eLife
5828 papers in training set
Top 42%
2.3%
15
Ecology and Evolution
267 papers in training set
Top 3%
2.1%
16
Communications Biology
993 papers in training set
Top 15%
1.7%
17
Science Advances
1243 papers in training set
Top 21%
1.7%
18
Scientific Data
209 papers in training set
Top 2%
1.7%
19
Methods in Ecology and Evolution
176 papers in training set
Top 1%
1.7%
20
Ecological Applications
34 papers in training set
Top 0.5%
1.5%
21
Ecology Letters
135 papers in training set
Top 1%
1.4%
22
PNAS Nexus
159 papers in training set
Top 1%
1.4%
23
Global Change Biology
78 papers in training set
Top 1%
1.3%
24
Molecular Ecology Resources
171 papers in training set
Top 2%
1.1%
25
Patterns
78 papers in training set
Top 2%
1.1%
26
Journal of Geophysical Research: Biogeosciences
11 papers in training set
Top 0.2%
1.1%
27
Journal of Applied Ecology
39 papers in training set
Top 0.9%
1.1%
28
Ecography
54 papers in training set
Top 1%
1.0%
29
Cell Systems
201 papers in training set
Top 5%
0.8%
30
The ISME Journal
228 papers in training set
Top 3%
0.8%