Back

ACCIO: An Assembly-Based Tool Enabling Plasmid Detection

2025-11-02 infectious diseases Title + abstract only
View on medRxiv
Show abstract

2.Plasmids are extrachromosomal mobile genetic elements that often carry genes responsible for antimicrobial resistance. Plasmid epidemiology aims to track the evolution and spread of plasmids, but the field currently faces significant barriers that make practical implementation using whole genome sequence data difficult. Hybrid-assembled genomes remain the most reliable way to identify and track complete plasmids; however, most genomic surveillance data exists in the form of short-read sequenci...

Predicted journal destinations

1
Nature Communications
483 training papers
Top 3% 17.1%
2
Scientific Reports
701 training papers
Top 29% 7.5%
3
eLife
262 training papers
Top 11% 4.0%
4
PLOS ONE
1737 training papers
Top 87% 3.7%
5
PLOS Computational Biology
141 training papers
Top 5% 3.7%
6
Viruses
79 training papers
Top 0.8% 3.7%
7
Microbial Genomics
24 training papers
#1 3.7%
8
Nature
58 training papers
Top 0.7% 2.7%
9
Nature Medicine
88 training papers
Top 3% 1.9%
10
Clinical Infectious Diseases
219 training papers
Top 15% 1.9%
11
Frontiers in Microbiology
36 training papers
Top 0.3% 1.9%
12
iScience
74 training papers
Top 4% 1.9%
13
Virus Evolution
26 training papers
Top 0.3% 1.9%
14
BMC Genomics
15 training papers
#1 1.9%
15
Microbiology Spectrum
86 training papers
Top 2% 1.9%
16
Journal of Clinical Microbiology
77 training papers
Top 4% 1.5%
17
Genome Medicine
56 training papers
Top 6% 1.5%
18
Nature Microbiology
21 training papers
#1 1.5%
19
PLOS Pathogens
35 training papers
Top 1% 1.3%
20
Cell Reports Medicine
49 training papers
Top 4% 1.3%
21
Med
26 training papers
Top 0.3% 1.3%
22
eBioMedicine
82 training papers
Top 5% 1.3%
23
mBio
34 training papers
Top 1.0% 1.3%
24
Proceedings of the National Academy of Sciences
100 training papers
Top 11% 1.3%
25
Emerging Infectious Diseases
84 training papers
Top 10% 1.3%
26
Science Translational Medicine
40 training papers
Top 3% 1.1%
27
Science
46 training papers
Top 4% 1.1%
28
JCI Insight
63 training papers
Top 7% 0.9%
29
Epidemics
96 training papers
Top 9% 0.9%
30
Science Advances
52 training papers
Top 4% 0.9%