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Exploiting TGF-β-mediated Stromal Programming in Homologous Recombination-Deficient Pancreatic Cancer

Roger, E.; Mummey, H. M.; Zimmer, E.; Srinivasan, D.; Härle, A.; Moubri, L.; Beutel, A. K.; Singh, R.; Ekizce, M.; Melzer, M. K.; Lee, Y.; Silva, A.; Härle, L.; Engleitner, T.; Arnold, F.; Morawe, M.; Naggay, B.; Schneider, J.; Gilberg, L.; Mosler, J. P.; Ludwig, C.; Meng, C.; Hirschenberger, M.; Hunszinger, V.; Kluck, K.; Kirchner, M.; Volckmar, A.-L.; Wirth, M.; Alhamdani, M. S. S.; Hoheisel, J. D.; Löhr, J.- M.; Seufferlein, T.; Abaei, A.; Kemkemer, R.; Rad, R.; Budczies, J.; Mulaw, M.; Hermann, P. C.; Hänle, M.; Sparrer, K. M.; Halbrook, C. J.; Gaulton, K. J.; Steinestel, K.; Stenzinge

2025-09-18 cancer biology
10.1101/2025.09.16.676458 bioRxiv
Show abstract

The tumor microenvironment (TME) actively contributes to pancreatic ductal adenocarcinoma (PDAC) pathogenesis through dynamic bidirectional tumor-stroma interactions. Here, we demonstrate that homologous recombination-defective (HRD) tumor epithelium reprograms the TME in a genotype-specific manner to enhance cancer aggressiveness. Using genetically engineered mouse models, pancreatic stellate cell (PSC) and cancer-associated fibroblast (CAF) co-culture systems, single-nucleus multiomics, and human PDAC models, we show that tumoral loss of ATM serine/threonine kinase drives CAFs toward SMA+ myofibroblastic differentiation, independently of P53 status. These myCAFs, in turn, promote cancer aggressiveness and chemoresistance. Mechanistically, ATM deficiency increases reactive oxygen species and contractility signaling, enhancing TGF-{beta}1 secretion. Pharmacological TGF-{beta} inhibition reverses myCAF differentiation, sensitizes tumors to chemotherapy, and impairs tumor progression in both murine and human ATM-null models. Our findings reveal that ATM-deficient tumors shape a cancer-promoting niche via TGF-{beta} signaling and identify dual targeting of intrinsic and extrinsic vulnerabilities as a promising precision oncology strategy. SIGNIFICANCEHRD pancreatic cancers reprogram the tumor microenvironment in a genotype-specific manner through TGF-{beta}-driven myCAF-enrichment. Targeting this stromal axis alongside platinum-based chemotherapy improves therapeutic efficacy in ATM-deficient models. These findings highlight the need to integrate epithelial genotype and stromal context for truly personalized treatment strategies in PDAC.

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