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CSDE1 promotes passenger strand cleavage of miR-486

Arvand, A.; Ko, Y.; Chen, T.; Tsao, E.; Patel, M. Z.; Hiscock, L.; Harvey, L.-M.; Simard, M. J.; Hope, K.; Shin, C.; Kakumani, P.

2025-09-15 molecular biology
10.1101/2025.09.09.675073 bioRxiv
Show abstract

Strand separation of the RNA duplex is a critical step in miRNA biogenesis, in which only the guide strand is retained to form the mature miRISC. The erythroid miRNA miR-486-5p uniquely requires AGO2 catalytic slicing of its passenger strand miR-486-3p, yet the factors regulating this process remain poorly understood. Here, we identify the RNA-binding protein CSDE1 as a key cofactor that promotes AGO2-dependent passenger-strand removal and miR-486-5p maturation. CSDE1 interacts with the N-terminal domain of AGO2, essential for strand release. Loss of CSDE1 increased the miR-486-3p/5p ratio, reduced cleavage efficiency, and derepressed miR-486 targets such as FOXO1 and PTEN. Restoring full-length CSDE1 expression restored AGO2-dependent passenger strand cleavage and this function requires the N-terminal cold-shock domain CSD1, which mediates CSDE1 interaction with AGO2. Together, these results demonstrate CSDE1 as a critical regulator of AGO2-mediated strand separation, potentiating miR-486-5p function in target gene silencing associated with in hematological malignancies.

Published in RNA Biology (predicted rank #13) · training set

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