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Inverse-scattering in biological samples via beam-propagation

Kim, J.; Bolton, B.; Moshksayan, K.; Khanna, R.; Swartz, M. E.; Ziemczonok, M.; Kamra, M.; Jorn, K. A.; Parekh, S. H.; Kujawinska, M.; Eberhart, J.; Cenik, E. S.; Ben-Yakar, A.; Chowdhury, S.

2025-08-22 bioengineering
10.1101/2025.08.17.670744 bioRxiv
Show abstract

Multiple scattering limits optical imaging in thick biological samples by scrambling sample-specific information. Physics-based inverse-scattering methods aim to computationally recover this information, often using non-convex optimization to reconstruct the scatter-corrected sample. However, this non-convexity can lead to inaccurate reconstructions, especially in highly scattering samples. Here, we show that various implementation strategies for even the same inverse-scattering method significantly affect reconstruction quality. We demonstrate this using multi-slice beam propagation (MSBP), a relatively simple nonconvex inverse-scattering method that reconstructs a scattering samples 3D refractive-index (RI). By systematically conducting MSBP-based inverse-scattering on both phantoms and biological samples, we showed that an amplitude-only cost function in the inverse-solver, combined with angular and defocus diversity in the scattering measurements, enabled high-quality, fully-volumetric RI imaging. This approach achieved subcellular resolution and label-free 3D contrast across diverse, multiple-scattering samples. These results lay the groundwork for robust use of inverse-scattering techniques to achieve biologically interpretable 3D imaging in increasingly thick, multicellular samples, introducing a new paradigm for deep-tissue computational imaging.

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