Back

Analysis of human visual experience data

Zauner, J.; Nicholls, A.; Ostrin, L. A.; Spitschan, M.

2025-08-15 neuroscience
10.1101/2025.08.11.669764 bioRxiv
Show abstract

Exposure to the optical environment -- often referred to as visual experience -- profoundly influences human physiology and behavior across multiple time scales. In controlled laboratory settings, stimuli can be held constant or manipulated parametrically. However, such exposures rarely replicate real-world conditions, which are inherently complex and dynamic, generating high-dimensional datasets that demand rigorous and flexible analysis strategies. This tutorial presents an analysis pipeline for visual experience datasets, with a focus on reproducible workflows for human chronobiology and myopia research. Light exposure and its retinal encoding affect human physiology and behavior across multiple time scales. Here we provide step-by-step instructions for importing, visualizing, and processing viewing distance and light exposure data. This includes time-series analyses for working distance, biologically relevant light metrics, and spectral characteristics. The tasks are standardized through the open-source R package LightLogR. By leveraging a modular approach, the tutorial supports researchers in building flexible and robust pipelines that accommodate diverse experimental paradigms and measurement systems.

Matching journals

The top 4 journals account for 50% of the predicted probability mass.

1
Behavior Research Methods
30 papers in training set
Top 0.1%
22.9%
2
Journal of Vision
110 papers in training set
Top 0.1%
13.5%
3
Scientific Data
209 papers in training set
Top 0.3%
9.3%
4
PLOS ONE
5266 papers in training set
Top 27%
5.8%
50% of probability mass above
5
eLife
5828 papers in training set
Top 26%
4.5%
6
Journal of Biological Rhythms
25 papers in training set
Top 0.1%
4.5%
7
PLOS Computational Biology
1863 papers in training set
Top 9%
3.4%
8
Neurophotonics
42 papers in training set
Top 0.2%
2.8%
9
HardwareX
18 papers in training set
Top 0.1%
2.6%
10
Optics Express
26 papers in training set
Top 0.2%
2.0%
11
Journal of Neuroscience Methods
122 papers in training set
Top 1.0%
1.8%
12
Scientific Reports
3612 papers in training set
Top 58%
1.6%
13
Wellcome Open Research
67 papers in training set
Top 0.9%
1.4%
14
eneuro
439 papers in training set
Top 6%
1.2%
15
Nature Communications
5641 papers in training set
Top 50%
1.2%
16
Nature Protocols
33 papers in training set
Top 0.4%
1.0%
17
iScience
1154 papers in training set
Top 33%
0.9%
18
Journal of Open Source Software
25 papers in training set
Top 0.4%
0.9%
19
Biology Open
156 papers in training set
Top 3%
0.9%
20
Frontiers in Neuroscience
256 papers in training set
Top 7%
0.6%
21
Neuroscience of Consciousness
16 papers in training set
Top 0.3%
0.6%
22
Biomedical Physics & Engineering Express
11 papers in training set
Top 0.4%
0.6%
23
MethodsX
16 papers in training set
Top 0.4%
0.5%
24
Methods in Ecology and Evolution
176 papers in training set
Top 2%
0.5%
25
Computational and Structural Biotechnology Journal
242 papers in training set
Top 9%
0.5%
26
Current Protocols
15 papers in training set
Top 0.3%
0.5%
27
Frontiers in Behavioral Neuroscience
49 papers in training set
Top 1%
0.5%
28
Frontiers in Neuroinformatics
41 papers in training set
Top 0.8%
0.5%
29
PeerJ
308 papers in training set
Top 14%
0.5%