Back

Gene model for the ortholog of cnk in Drosophila erecta

Laskowski, L. F.; Cowan, B.; Leissa, G.; Wallace, H. O. W.; Bose, I.; Thompson, J. S.; Santisteban, M. S.

2025-08-12 genomics
10.1101/2025.08.06.668985 bioRxiv
Show abstract

Gene model for the ortholog of connector enhancer of ksr (cnk) in the Dere_CAF1 Genome Assembly (GenBank Accession: GCA_000005135.1) of Drosophila erecta. This ortholog was characterized as part of a developing dataset to study the evolution of the Insulin/insulin-like growth factor signaling pathway (IIS) across the genus Drosophila using the Genomics Education Partnership gene annotation protocol for Course-based Undergraduate Research Experiences.

Matching journals

The top 3 journals account for 50% of the predicted probability mass.

1
G3: Genes, Genomes, Genetics
◐ 252 papers in training set
Top 0.1%
23.2%
Similar papers in this journal
2
G3 Genes|Genomes|Genetics
◐ 351 papers in training set
Top 0.2%
15.7%
Similar papers in this journal
3
BMC Genomics
○ 406 papers in training set
Top 0.2%
12.4%
Similar papers in this journal
50% of probability mass above
4
Journal of Molecular Evolution
○ 22 papers in training set
Top 0.1%
5.7%
Similar papers in this journal
5
Genome Biology and Evolution
◐ 338 papers in training set
Top 1%
4.5%
Similar papers in this journal
6
Frontiers in Genetics
○ 230 papers in training set
Top 0.9%
3.6%
7
GENETICS
◐ 483 papers in training set
Top 2%
2.9%
8
Biology Open
● 156 papers in training set
Top 1%
2.0%
9
G3
◐ 33 papers in training set
Top 0.3%
1.6%
10
Scientific Reports
○ 3612 papers in training set
Top 57%
1.5%
11
Genes
○ 144 papers in training set
Top 2%
1.5%
12
eLife
● 5828 papers in training set
Top 57%
1.2%
13
Molecular Biology and Evolution
◐ 542 papers in training set
Top 4%
1.2%
14
Insect Biochemistry and Molecular Biology
○ 30 papers in training set
Top 0.3%
1.1%
15
Bioinformatics
◐ 1204 papers in training set
Top 8%
1.1%
16
Gigabyte
● 62 papers in training set
Top 1.0%
1.0%
17
Developmental Biology
○ 150 papers in training set
Top 1%
1.0%
18
PLOS ONE
● 5266 papers in training set
Top 57%
1.0%
19
Insect Molecular Biology
○ 20 papers in training set
Top 0.2%
0.9%
20
PeerJ
◐ 308 papers in training set
Top 10%
0.9%
21
PLOS Genetics
● 862 papers in training set
Top 13%
0.6%
22
International Journal of Molecular Sciences
○ 494 papers in training set
Top 16%
0.6%
23
Computational and Structural Biotechnology Journal
● 242 papers in training set
Top 8%
0.5%
24
Nucleic Acids Research
◐ 1281 papers in training set
Top 16%
0.5%
25
Open Biology
● 106 papers in training set
Top 3%
0.5%
26
BMC Bioinformatics
○ 457 papers in training set
Top 6%
0.5%
27
Genomics
○ 64 papers in training set
Top 2%
0.5%
28
Chromosoma
○ 14 papers in training set
Top 0.2%
0.5%

"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.