Back

Disentangling multivariate relationships between cognition, language and social traits: structures of G, E, and rGE

Schlag, F.; de Hoyos, L.; Verhoef, E.; Klassmann, A.; van den Bedem, S.; Fisher, S. E.; Verhulst, B. E.; St Pourcain, B.

2025-07-29 genomics
10.1101/2025.07.26.666154 bioRxiv
Show abstract

BackgroundCognitive, language, and social abilities are complex, heritable and intertwined traits shaping childrens development and later mental health. To better understand cross-trait interrelationships, we model here the structures of shared genomic and shared non-genomic/residual (i.e. broadly environmental) influences, and their correlation (rGE), investigating cognitive, language, and social behavioural/communication measures. MethodsData were obtained for unrelated children (8-13 years) from two population-based cohorts: the UK Avon Longitudinal Study of Parents and Children (ALSPAC, N[≤]6,543) and the US Adolescent Brain Cognitive DevelopmentSM (ABCD) Study (N[≤]4,412), and analyses were carried out implementing an extended data-driven genetic-relationship-matrix structural equation modelling (GRM-SEM) approach. ResultsIn ALSPAC, we identified two independent phenotypic domains, each captured by a structurally matching pair consisting of a genomic (A) and a non-genomic/residual (E) factor. The first domain reflected cognitive/language difficulties, with the largest genomic and residual factor loadings ({lambda}A and {lambda}E, respectively) for verbal IQ ({lambda}A=0.73(SE=0.05); {lambda}E=0.57(SE=0.07)). The second domain captured social difficulties, with the largest {lambda}A and {lambda}E for social communication measures ({lambda}A=0.39(SE=0.10); {lambda}E=0.82(SE=0.10)). We identified trait-specific rGE between pairs of A and E factors with different directions of effect (cognition/language rGE=0.89(SE=0.18), social rGE=-0.62(SE=0.17)). rGE patterns were linked to increased measurable A and E contributions for cognition/language difficulties, but decreased contributions for social problems. Analyses in ABCD confirmed the two domains for E and phenotypic structures, although genomic contributions were low. ConclusionsIn childhood, cognitive/language abilities versus social abilities are influenced by distinct genomic and/or environmental factors, potentially interlinked through trait-specific rGE, suggesting differences in developmental processes.

Matching journals

The top 6 journals account for 50% of the predicted probability mass.

1
Developmental Science
15 papers in training set
Top 0.1%
23.1%
2
Behavior Genetics
15 papers in training set
Top 0.1%
10.4%
3
Journal of Child Psychology and Psychiatry
25 papers in training set
Top 0.1%
7.0%
4
International Journal of Epidemiology
74 papers in training set
Top 0.4%
4.3%
5
Philosophical Transactions of the Royal Society B
51 papers in training set
Top 1%
3.7%
6
Nature Communications
4913 papers in training set
Top 38%
3.7%
50% of probability mass above
7
eLife
5422 papers in training set
Top 32%
2.7%
8
PLOS Genetics
756 papers in training set
Top 6%
2.4%
9
PLOS ONE
4510 papers in training set
Top 47%
2.1%
10
Molecular Psychiatry
242 papers in training set
Top 2%
1.9%
11
PLOS Medicine
98 papers in training set
Top 2%
1.9%
12
Genetic Epidemiology
46 papers in training set
Top 0.4%
1.7%
13
Frontiers in Genetics
197 papers in training set
Top 5%
1.7%
14
Scientific Reports
3102 papers in training set
Top 56%
1.7%
15
Nature Genetics
240 papers in training set
Top 4%
1.7%
16
Biological Psychiatry
119 papers in training set
Top 2%
1.7%
17
Proceedings of the National Academy of Sciences
2130 papers in training set
Top 34%
1.5%
18
Communications Biology
886 papers in training set
Top 15%
1.1%
19
Genes
126 papers in training set
Top 2%
1.0%
20
Evolution Letters
71 papers in training set
Top 1%
1.0%
21
European Journal of Human Genetics
49 papers in training set
Top 1%
0.9%
22
American Journal of Biological Anthropology
11 papers in training set
Top 0.2%
0.9%
23
Human Molecular Genetics
130 papers in training set
Top 3%
0.8%
24
Nature Human Behaviour
85 papers in training set
Top 4%
0.8%
25
Developmental Cognitive Neuroscience
81 papers in training set
Top 0.5%
0.8%
26
BMC Medicine
163 papers in training set
Top 7%
0.8%
27
Social Science & Medicine
15 papers in training set
Top 0.9%
0.8%
28
PLOS Computational Biology
1633 papers in training set
Top 25%
0.7%
29
npj Science of Learning
17 papers in training set
Top 0.1%
0.7%
30
Neurobiology of Stress
42 papers in training set
Top 0.6%
0.7%