Back

Effects of nystatin on discrete unit 150-3000 Hz extracellular spikes in biofilm forming Hericium erinaceus liquid cultures recorded using custommicroelectrode arrays

Browner, D.; Adamatzky, A.

2025-07-18 bioengineering
10.1101/2025.07.16.662945 bioRxiv
Show abstract

Extracellular electrical potentials have been observed in a number of filamentous mycelial species with incommensurable and non-stereotypic features. In Basidiomycetes, detecting these signals reliably is dependent on the properties of the cell wall and plasma membrane and requires implementation of microelectrode array hardware, filtering and spike sorting methods. In this paper, we present recording methods for detection of discrete unit extracellular spikes in biofilm forming liquid cultures of Hericium erinaceus. We utilised custom designed microelectrode arrays (MEAs) with passive planar hard gold microelectrodes and individual radius of 100 {micro}m in recordings at a sample rate of 30 kHz. Triplicate recordings of mycelial samples in a double shielded electromagnetic and RF shield box were conducted for wild-type, ionophore assays and fungicidal assays. The recordings were analysed offline using the Kilosort4 sorting algorithm resulting in detection of discrete unit spikes with milliseconds durations. The clustered spike waveforms for the wild-type triplicates were estimated to have a mean trough-to-peak-time of 2.68 {+/-} 0.087 ms and width at half maximum of 0.8 {+/-} 0.031 ms across a combined total of 418 spiking units. Ionophore assays using nystatin solution (10,000 units/ml) exhibited significant statistical differences including a reduction of total units to 97. A decrease in the trough-to-peak time of the mean waveform (1.97 {+/-} 0.32 ms) and an increase in the width at half maximum (2.7 {+/-} 2.45 ms) were also observed. Nystatin was found reduce the mean extracellular spike amplitude from 173.06 {micro}V in the wild-type to 25.76 {micro}V in the assay. Physiological disruption of the cell wall and plasma membrane was confirmed by environmental scanning microscopy comparison of triplicates at 90 % humidity. In comparison, a fungicidal assay utilising 12% w/v H2O2 solution resulted in zero spiking units and absence of discrete unit activity across all channels in triplicate recordings.

Matching journals

The top 8 journals account for 50% of the predicted probability mass.

1
Scientific Reports
3102 papers in training set
Top 1%
17.9%
2
PLOS ONE
4510 papers in training set
Top 15%
12.6%
3
Frontiers in Bioengineering and Biotechnology
88 papers in training set
Top 0.3%
5.0%
4
BMC Methods
11 papers in training set
Top 0.1%
3.7%
5
Insects
36 papers in training set
Top 0.4%
3.1%
6
Lab on a Chip
88 papers in training set
Top 0.4%
3.1%
7
mSphere
281 papers in training set
Top 2%
2.9%
8
Biotechnology and Bioengineering
49 papers in training set
Top 0.3%
2.4%
50% of probability mass above
9
Biosensors and Bioelectronics
52 papers in training set
Top 0.7%
1.8%
10
PeerJ
261 papers in training set
Top 6%
1.8%
11
Frontiers in Microbiology
375 papers in training set
Top 5%
1.7%
12
BMC Genomics
328 papers in training set
Top 2%
1.7%
13
F1000Research
79 papers in training set
Top 2%
1.7%
14
Frontiers in Cellular and Infection Microbiology
98 papers in training set
Top 3%
1.5%
15
Journal of Microbiological Methods
11 papers in training set
Top 0.3%
1.4%
16
PLOS Computational Biology
1633 papers in training set
Top 19%
1.3%
17
The Analyst
15 papers in training set
Top 0.3%
1.3%
18
Journal of Neural Engineering
197 papers in training set
Top 2%
0.8%
19
Plant Methods
39 papers in training set
Top 0.7%
0.8%
20
iScience
1063 papers in training set
Top 28%
0.8%
21
ACS Omega
90 papers in training set
Top 3%
0.8%
22
FEMS Microbiology Ecology
47 papers in training set
Top 0.4%
0.8%
23
Computational and Structural Biotechnology Journal
216 papers in training set
Top 8%
0.8%
24
Biofilm
15 papers in training set
Top 0.1%
0.8%
25
ACS Infectious Diseases
74 papers in training set
Top 1%
0.8%
26
Sensors
39 papers in training set
Top 2%
0.8%
27
Journal of The Royal Society Interface
189 papers in training set
Top 4%
0.8%
28
Philosophical Transactions of the Royal Society B
51 papers in training set
Top 6%
0.7%
29
Frontiers in Neuroscience
223 papers in training set
Top 8%
0.7%
30
Journal of Neuroscience Methods
106 papers in training set
Top 2%
0.7%