Improving Joint Estimation of Vital Rates in IPMs via Gaussian Processes and ABC
Zhu, Z.; Christodoulou, M. D.; Steinsaltz, D.
Show abstract
O_LIDeveloping population dynamic models that can flexibly adapt to different species remains a challenge due to the context-dependent nature of demographic studies. This work introduces ABC GP IPM, a novel Integral Projection Model (IPM) framework, aimed at mitigating key limitations associated with traditional IPMs, including (i) reliance on predefined vital rate models with restrictive assumptions, (ii) omission of potential vital rate interactions, and (iii) limited flexibility in incorporating domain- or user-specific knowledge. The purpose of this work is to enhance the adaptability and accuracy of IPMs across various ecological and evolutionary studies. C_LIO_LIOur methodology integrates Gaussian Process (GP) models with Approximate Bayesian Computation (ABC). GP models introduce a non-parametric structure that accommodates a broader range of demographic patterns, reducing sensitivity to specific model choices. The incorporation of ABC methods allows IPMs to integrate additional population-level information, enabling potential interactions among vital rates to be reflected in model outcomes without requiring additional datasets. The information can be user-modified, facilitating the tailoring of IPMs to specific requirements or domain-specific knowledge. Recognising the inherent challenge of selecting appropriate summary statistics in ABC applications, we further propose a systematic procedure tailored to navigate this complexity effectively when applying ABC GP to IPMs. C_LIO_LIThe method demonstrated strong flexibility and adaptability across different modeling scenarios. In simulation studies, ABC GP IPM showed notable improvements over traditional GLM-based IPMs across multiple population metrics commonly used in biological research. When applied to real-world datasets, the method captured complex demographic patterns more effectively, supporting its potential as a practical and adaptable alternative to existing IPM frameworks. C_LIO_LIThe ABC GP IPM framework provides greater flexibility in model specification, accommodating potential non-linearities with fewer assumptions. It also facilitates the incorporation of user expertise and domain-specific knowledge, enhancing its applicability to context-dependent demographic studies. While offering a more adaptable modeling approach, the method remains accessible to users without specialized expertise in statistical modeling. Importantly, ABC GP IPM delivers these improved outcomes using identical datasets as standard IPMs, facilitating easier adoption for studies that have applied traditional IPMs. C_LI
Matching journals
The top 6 journals account for 50% of the predicted probability mass.
Similar papers in this journal
- Analysing biodiversity observation data collected in continuous time: Should we use discrete- or continuous-time occupancy models? 95%
- Flexible movement kernel estimation in habitat selection analyses with generalized additive models 95%
- Reconstructing Langevin systems from high and low-resolution time series using Euler and Hermite reconstructions 95%
Similar papers in this journal
- EpiLPS: a fast and flexible Bayesian tool for near real-time estimation of the time-varying reproduction number 94%
- CrossLabFit: A Novel Framework for Integrating Qualitative and Quantitative Data Across Multiple Labs for Model Calibration 94%
- Robust Inference of Population Size Histories from Genomic Sequencing Data 94%
Similar papers in this journal
- A machine learning method for estimating the probability of presence using presence-background data 96%
- Population genetics meets ecology: a guide to individual-based simulations in continuous landscapes 94%
- gauseR: Simple methods for fitting Lotka-Volterra models describing Gause's "Struggle for Existence" 94%
"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.