Back

High-Quality PacBio Genome Assembly of Populus alba L. Villafranca

Sarfraz, I.; Zuccolo, A.; Celii, M.; Francini, A.; Wing, R. A.; Sebastiani, L.

2025-07-04 genomics
10.1101/2025.06.30.661909 bioRxiv
Show abstract

This study presents the high-quality genome assemblies for Populus alba L. "Villafranca" using PacBio HiFi sequencing. The assembly span 498.95 Mb, an N50 of 18.18 Mb and largest contig of 52.03 Mb. BUSCO analysis revealed genome completeness (embryophyta_odb10) with 98.8% of the 1,614 BUSCO groups searched. The Transposable element and repetitive content accounted for [~]31.37%. The comparison of P. alba and P. trichocarpa genomes identified 9,741 structural variants (SVs) This comprehensive analysis provides valuable resources for studying poplar genome evolution, domestication, and genetic improvement, underscoring the utility of long-read sequencing for resolving complex genomic features.

Matching journals

The top 4 journals account for 50% of the predicted probability mass.

1
PLOS ONE
● 5266 papers in training set
Top 10%
18.7%
Similar papers in this journal
2
BMC Genomics
○ 406 papers in training set
Top 0.1%
15.2%
Similar papers in this journal
3
Gigabyte
● 62 papers in training set
Top 0.1%
10.7%
Similar papers in this journal
4
Genes
○ 144 papers in training set
Top 0.3%
5.6%
Similar papers in this journal
50% of probability mass above
5
Scientific Reports
○ 3612 papers in training set
Top 24%
4.1%
Similar papers in this journal
6
BMC Plant Biology
○ 57 papers in training set
Top 0.4%
3.1%
7
Genomics
○ 64 papers in training set
Top 0.3%
3.1%
8
G3 Genes|Genomes|Genetics
◐ 351 papers in training set
Top 2%
2.5%
9
Frontiers in Plant Science
○ 256 papers in training set
Top 3%
2.1%
10
Molecular Genetics and Genomics
○ 12 papers in training set
Top 0.1%
2.1%
11
Molecular Biology Reports
○ 21 papers in training set
Top 0.3%
1.9%
12
BMC Research Notes
○ 33 papers in training set
Top 0.2%
1.9%
13
Microbiology Resource Announcements
● 25 papers in training set
Top 0.2%
1.9%
14
Frontiers in Genetics
○ 230 papers in training set
Top 2%
1.7%
15
G3: Genes, Genomes, Genetics
◐ 252 papers in training set
Top 2%
1.7%
16
DNA Research
◐ 26 papers in training set
Top 0.2%
1.3%
17
Computational and Structural Biotechnology Journal
● 242 papers in training set
Top 5%
1.1%
18
G3
◐ 33 papers in training set
Top 0.4%
1.1%
19
International Journal of Molecular Sciences
○ 494 papers in training set
Top 11%
1.1%
20
GigaScience
◐ 212 papers in training set
Top 4%
1.0%
21
Microbiology Spectrum
● 469 papers in training set
Top 10%
0.9%
22
Plant Molecular Biology
○ 20 papers in training set
Top 0.8%
0.9%
23
F1000Research
○ 88 papers in training set
Top 4%
0.9%
24
NAR Genomics and Bioinformatics
◐ 242 papers in training set
Top 5%
0.6%

"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.