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Nuclear Receptor Transcription factors promote axon regeneration in the Adult Corticospinal Tract

Sahu, Y.; Banerjee, S.; Kumaran, M.; Sanyal, K.; Konda, M.; Soni, S.; Menon, A. S.; Manjunath, S.; Kesireddy, D. K.; Beji, D. S.; Chermakani, P.; Biswas, A.; Venkatesh, I.

2025-06-23 neuroscience
10.1101/2025.06.19.660319 bioRxiv
Show abstract

Transcription factors are potent levers for neural repair, but systematic pipelines to uncover factors that unlock adult corticospinal regeneration are lacking. By intersecting developmental RNA-seq with ATAC-seq footprints, we pinpointed two nuclear-receptor transcription factors--NR2F1 and NR2F6, neither previously linked to CNS axon growth--as top candidates. Forced expression of either factor doubled neurite length in culture, and each proved highly effective in vivo: after unilateral pyramidotomy they drove robust midline sprouting, while after complete thoracic crush they supported long-tract CST regeneration that restored hip lift, partial swing trajectories and grip strength. Multi-omics dissection revealed complementary mechanisms: NR2F1 re-engaged chromatin-remodelling and cytoskeletal networks, whereas NR2F6, via a conserved corepressor domain, imposed a broad translational down-shift, bound predominantly to distal enhancers and re-packaged chromatin into new topologically associating domains that cluster growth genes with freshly activated regulatory hubs. These discoveries establish NR2F1 and NR2F6 as novel pro-regenerative TFs, demonstrate their potency across lesion types, and expose repression-driven translational control and enhancer-TAD reconfiguration as previously unrecognised axes of CNS repair.

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