Back

Understanding Plasmodium vivax recurrent infections using an amplicon deep sequencing assay, PvAmpSeq, identity-by-descent and model-based classification

2025-05-26 infectious diseases Title + abstract only
View on medRxiv
Show abstract

Plasmodium vivax infections are characterised by recurrent bouts of blood-stage parasitaemia. Understanding the genetic relatedness of recurrences can help distinguish whether these are caused by relapse, reinfection, or recrudescence, which is critical to understand treatment efficacy and transmission dynamics. We developed PvAmpseq, an amplicon sequencing assay targeting 11 SNP-rich regions of the P. vivax genome. PvAmpSeq was applied to field isolates from a clinical trial in the Solomon Isla...

Predicted journal destinations

1
Nature Communications
483 training papers
Top 1.0% 22.6%
2
eLife
262 training papers
Top 2% 7.9%
3
Scientific Reports
701 training papers
Top 44% 6.0%
4
PLOS Neglected Tropical Diseases
166 training papers
Top 4% 6.0%
5
PLOS Computational Biology
141 training papers
Top 4% 4.2%
6
The Journal of Infectious Diseases
137 training papers
Top 3% 3.9%
7
Clinical Infectious Diseases
219 training papers
Top 12% 2.8%
8
Nature Medicine
88 training papers
Top 2% 2.8%
9
PLOS ONE
1737 training papers
Top 92% 2.0%
10
Emerging Infectious Diseases
84 training papers
Top 5% 2.0%
11
Nature Microbiology
21 training papers
#1 1.6%
12
Nature
58 training papers
Top 3% 1.6%
13
Malaria Journal
23 training papers
Top 0.8% 1.6%
14
Proceedings of the National Academy of Sciences
100 training papers
Top 8% 1.6%
15
The Lancet Infectious Diseases
57 training papers
Top 3% 1.6%
16
Viruses
79 training papers
Top 4% 1.6%
17
PLOS Pathogens
35 training papers
Top 1% 1.4%
18
Epidemics
96 training papers
Top 7% 1.4%
19
Microbiology Spectrum
86 training papers
Top 5% 1.0%
20
BMC Medicine
155 training papers
Top 27% 1.0%
21
Science Translational Medicine
40 training papers
Top 3% 1.0%
22
Science
46 training papers
Top 5% 1.0%
23
The Lancet Microbe
33 training papers
Top 2% 1.0%
24
mBio
34 training papers
Top 2% 1.0%
25
Communications Medicine
63 training papers
Top 4% 1.0%
26
Virus Evolution
26 training papers
Top 0.8% 1.0%
27
Journal of Clinical Microbiology
77 training papers
Top 6% 1.0%
28
eBioMedicine
82 training papers
Top 12% 0.7%
29
Journal of The Royal Society Interface
54 training papers
Top 6% 0.7%
30
Microbial Genomics
24 training papers
Top 1% 0.7%