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Dengue virus outbreak in Cochabamba, Bolivia

Villarroel, P. M. S.; Sen, S.; Klitting, R.; Pezzi, L.; Piorkowski, G.; Siles, N. V.; Wichit, S.

2025-05-21 infectious diseases
10.1101/2025.05.19.25327817 medRxiv
Show abstract

With Aedes aegypti expanding to higher altitudes, dengue virus (DENV) cases soared to record levels in 2024 in Cochabamba, Bolivia (2,558 meters above sea level). Using genome sequencing, we identified at least two distinct clades of DENV-2 genotype II circulating during the outbreak.

Matching journals

The top 7 journals account for 50% of the predicted probability mass.

1
Emerging Infectious Diseases
● 105 papers in training set
Top 0.1%
18.6%
Similar papers in this journal
2
PLOS Neglected Tropical Diseases
● 466 papers in training set
Top 0.8%
12.7%
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3
PLOS Global Public Health
● 344 papers in training set
Top 2%
6.8%
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4
Virus Evolution
◐ 155 papers in training set
Top 0.5%
3.3%
Similar papers in this journal
5
Journal of Medical Virology
○ 140 papers in training set
Top 0.7%
3.2%
Similar papers in this journal
6
Open Forum Infectious Diseases
◐ 142 papers in training set
Top 1.0%
3.1%
7
BMC Infectious Diseases
○ 133 papers in training set
Top 1%
2.4%
50% of probability mass above
8
Viruses
○ 332 papers in training set
Top 2%
2.4%
9
Emerging Microbes & Infections
○ 74 papers in training set
Top 0.4%
2.4%
10
The Journal of Infectious Diseases
◐ 202 papers in training set
Top 1%
2.4%
11
The American Journal of Tropical Medicine and Hygiene
● 68 papers in training set
Top 0.5%
2.4%
12
Microbiology Spectrum
● 469 papers in training set
Top 6%
2.1%
13
Journal of Clinical Virology
○ 63 papers in training set
Top 0.3%
2.0%
14
Infection, Genetics and Evolution
○ 42 papers in training set
Top 0.3%
1.9%
15
International Journal of Infectious Diseases
○ 129 papers in training set
Top 1%
1.9%
16
PLOS ONE
● 5266 papers in training set
Top 48%
1.5%
17
Frontiers in Public Health
○ 148 papers in training set
Top 4%
1.4%
18
Eurosurveillance
● 83 papers in training set
Top 0.5%
1.3%
19
Travel Medicine and Infectious Disease
○ 14 papers in training set
Top 0.2%
1.1%
20
The Lancet Infectious Diseases
○ 73 papers in training set
Top 0.8%
1.1%
21
Frontiers in Microbiology
○ 427 papers in training set
Top 6%
1.1%
22
Heliyon
○ 152 papers in training set
Top 6%
1.1%
23
Microbiology Resource Announcements
● 25 papers in training set
Top 0.4%
1.0%
24
Archives of Virology
○ 15 papers in training set
Top 0.3%
0.8%
25
Nature Communications
○ 5641 papers in training set
Top 56%
0.8%
26
Scientific Reports
○ 3612 papers in training set
Top 72%
0.8%
27
The Lancet Regional Health - Americas
○ 22 papers in training set
Top 0.6%
0.8%
28
Tropical Medicine and Infectious Disease
○ 12 papers in training set
Top 0.4%
0.8%
29
Parasites & Vectors
○ 60 papers in training set
Top 1%
0.6%
30
PLOS Pathogens
● 820 papers in training set
Top 10%
0.6%

"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.