Back

Rainbow Nucleus Charts Dynamic Interactome of Membrane-less Organelles

Ye, S.; Benhamou Goldfajn, N.; So, C. L.; Inoue, T.; Cai, D.

2025-05-15 cell biology
10.1101/2025.05.14.654140 bioRxiv
Show abstract

Membrane-less organelles (MLOs) perform diverse and important functions inside cells. However, how they interact with each other to carry out these functions collectively is unknown. Here we devised a multi-spectral imaging technique called "Rainbow Nucleus" to simultaneously visualize five nuclear MLOs using live-cell imaging. We find that while some interactions are stable, such as those between the histone locus bodies and Cajal bodies, others are transient, such as those between PML bodies and Cajal bodies. Furthermore, interactions among MLOs are not random: functionally related MLOs interact more frequently than unrelated MLOs, and these interactions completely rewire when we inhibit transcription. Our study provides first glimpses into how different MLOs interact with each other under different conditions, and lays the foundation for future cellular engineering efforts that modulate MLOs interactome to treat diseases.

Matching journals

The top 9 journals account for 50% of the predicted probability mass.

1
Advanced Science
249 papers in training set
Top 1%
10.4%
2
eLife
5422 papers in training set
Top 8%
8.4%
3
Protein & Cell
25 papers in training set
Top 0.2%
6.8%
4
Journal of Molecular Cell Biology
21 papers in training set
Top 0.1%
6.4%
5
Biophysical Journal
545 papers in training set
Top 1%
4.0%
6
Neuroscience Bulletin
11 papers in training set
Top 0.1%
4.0%
7
Genomics, Proteomics & Bioinformatics
171 papers in training set
Top 2%
3.6%
8
iScience
1063 papers in training set
Top 5%
3.6%
9
PLOS ONE
4510 papers in training set
Top 40%
3.6%
50% of probability mass above
10
Advanced Biology
29 papers in training set
Top 0.1%
3.1%
11
Cell Discovery
54 papers in training set
Top 2%
2.7%
12
Cell Structure and Function
11 papers in training set
Top 0.1%
2.6%
13
Scientific Reports
3102 papers in training set
Top 48%
2.4%
14
PLOS Computational Biology
1633 papers in training set
Top 15%
1.9%
15
Cell Proliferation
12 papers in training set
Top 0.1%
1.9%
16
Communications Biology
886 papers in training set
Top 6%
1.9%
17
Journal of Structural Biology
58 papers in training set
Top 0.7%
1.7%
18
Frontiers in Cell and Developmental Biology
218 papers in training set
Top 4%
1.7%
19
Nature Communications
4913 papers in training set
Top 52%
1.7%
20
Analytical Chemistry
205 papers in training set
Top 2%
1.5%
21
Communications Physics
12 papers in training set
Top 0.2%
1.3%
22
Journal of Genetics and Genomics
36 papers in training set
Top 1%
1.1%
23
Cells
232 papers in training set
Top 5%
0.9%
24
Journal of Cell Biology
333 papers in training set
Top 4%
0.8%
25
Acta Biochimica et Biophysica Sinica
19 papers in training set
Top 0.9%
0.7%
26
Light: Science & Applications
16 papers in training set
Top 0.6%
0.7%
27
Open Biology
95 papers in training set
Top 2%
0.7%
28
Lab on a Chip
88 papers in training set
Top 1%
0.6%
29
Nature Methods
336 papers in training set
Top 7%
0.6%
30
Journal of Infection
71 papers in training set
Top 3%
0.6%