Back

In vitro-generated inflammatory fibroblasts secrete extracellular matrix with biochemical and biophysical properties similar to tissue-remodelling fibroblasts

de la Jara Ortiz, F.; Cimmino, C.; Grech, K.; Huynen, M.; Janssen, E.; Wagenaar, V.; van Zwam, M. C.; van den Dries, K.; Ventre, M.; Cambi, A.

2024-09-26 cell biology
10.1101/2024.09.26.614950 bioRxiv
Show abstract

In solid cancers, inflammation and viral infections, two main fibroblast subtypes have been identified: myofibroblast-like fibroblasts and inflammatory fibroblasts. In the tumour microenvironment (TME), these cancer-associated fibroblast (CAF) subtypes are known as myCAFs, which generate a stiffened fibrotic extracellular matrix (ECM), and iCAFs, which secrete inflammatory cytokines to locally modulate the immune response. Yet, whether iCAFs contribute to shaping the ECM biochemical and biophysical properties remains unknown, mainly because robust in vitro models to generate fibroblast subtypes are lacking. Here, we established an in vitro cell culture system based on murine NIH3T3 fibroblasts and stimulation by TGF{beta} and IL1, alone or in combination, to induce fibroblast subtypes. Gene expression analysis of well-documented myCAF (Acta2/Tagln) and iCAF (Ccl2/Il6/Lif) markers revealed that TGF{beta} induced a myCAF-like phenotype, while a combination of TGF{beta} and IL1 induced an iCAF-like phenotype. We compared these in vitro subtypes to myCAFs and iCAFs from publicly available scRNAseq data of tumour tissues from cancer patients. We found that, similar to myCAFs, both tumour-associated and in vitro iCAFs express Acta2/Tagln as well as genes encoding for typical ECM proteins, which correlated in vitro with the ability to contract collagen. Furthermore, fluorescence microscopy and atomic force microscopy revealed that in vitro both subtypes generate thick, layered and stiff matrices with highly aligned ECM, demonstrating for the first time that iCAFs may also contribute to a pathological ECM. Finally, matrices generated from these in vitro fibroblast subtypes, but not from uninduced or IL1-only stimulated fibroblasts, enhanced the expression of the immune suppression marker Arg1 in co-cultured macrophages. Our study provides new insights in the contribution of inflammatory fibroblasts to ECM deposition and remodelling and puts forward a well-defined in vitro model to generate different fibroblast subtypes for future in-depth mechanistic studies of their roles in cancer and other pathologies.

Matching journals

The top 9 journals account for 50% of the predicted probability mass.

1
Nature Communications
4913 papers in training set
Top 14%
12.3%
2
Advanced Science
249 papers in training set
Top 2%
8.4%
3
iScience
1063 papers in training set
Top 0.6%
8.4%
4
Frontiers in Cell and Developmental Biology
218 papers in training set
Top 0.4%
7.2%
5
Journal of Experimental & Clinical Cancer Research
25 papers in training set
Top 0.1%
4.3%
6
Journal of Cell Science
353 papers in training set
Top 0.6%
3.1%
7
Developmental Cell
168 papers in training set
Top 6%
2.7%
8
Scientific Reports
3102 papers in training set
Top 44%
2.7%
9
Cell Reports
1338 papers in training set
Top 19%
2.6%
50% of probability mass above
10
Cell Death Discovery
51 papers in training set
Top 0.4%
2.1%
11
EMBO Reports
88 papers in training set
Top 0.1%
1.9%
12
EMBO reports
136 papers in training set
Top 3%
1.7%
13
Matrix Biology
28 papers in training set
Top 0.1%
1.7%
14
Communications Biology
886 papers in training set
Top 9%
1.7%
15
Cell Communication and Signaling
35 papers in training set
Top 0.5%
1.5%
16
Biomaterials
78 papers in training set
Top 0.6%
1.5%
17
PLOS Biology
408 papers in training set
Top 12%
1.3%
18
Cancer Research
116 papers in training set
Top 2%
1.3%
19
Cell Systems
167 papers in training set
Top 8%
1.3%
20
The EMBO Journal
267 papers in training set
Top 2%
1.3%
21
eLife
5422 papers in training set
Top 49%
1.2%
22
JCI Insight
241 papers in training set
Top 5%
0.9%
23
Proceedings of the National Academy of Sciences
2130 papers in training set
Top 40%
0.9%
24
APL Bioengineering
18 papers in training set
Top 0.3%
0.9%
25
Cells
232 papers in training set
Top 5%
0.9%
26
Journal of Investigative Dermatology
42 papers in training set
Top 0.5%
0.9%
27
Cell Death & Disease
126 papers in training set
Top 2%
0.8%
28
Frontiers in Immunology
586 papers in training set
Top 7%
0.8%
29
The FASEB Journal
175 papers in training set
Top 3%
0.7%
30
Science Advances
1098 papers in training set
Top 30%
0.7%