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Four-dimensional label-free live cell image segmentation for predicting live birth potential of mouse embryos

Kanazawa, T.; Yao, T.; Takeshita, S.; Hirai, T.; Suenaga, R.; Yamada, T. G.; Tokuoka, Y.; Yamagata, K.; Funahashi, A.

2024-09-26 systems biology
10.1101/2024.09.25.614861 bioRxiv
Show abstract

1Selection of high-quality embryos is critical in assisted reproductive technology (ART), but it relies on visual assessment by experts, and the birth rate remains low. We previously developed a deep learning method to predict the birth of mouse embryos by quantifying the morphological features of cell nuclei. This method involves cell nuclear segmentation on fluorescence microscopy images, but fluorescence labeling of nuclei is not feasible in medical applications. Here, we developed FL2-Net, a nuclear segmentation method for time-series three-dimensional bright-field microscopy images of mouse embryos without fluorescence labeling. FL2-Net outperformed existing state-of-the-art segmentation methods. We predicted the birth potential of mouse embryos from the nuclear features quantified by bright-field microscopy image segmentation. Birth prediction accuracy of FL2-Net (81.63%) exceeded those of other methods and experts (55.32%). We expect that FL2-Net, which can quantify nuclear features of embryos non-invasively and with high accuracy, might be useful in ART.

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