Back

Targeted protein degradation in lysosome utilizing naturally produced bifunctional antibodies with high levels of mannose 6-phosphate glycans

Hedman, A. C.; Liu, S.; Srnak, J. A.; Marcinczyk, R. N.; Do, S.; Lyons, L. M.; Kornfeld, S.; Do, H.; Liu, L.

2024-09-03 biochemistry
10.1101/2024.09.03.611037 bioRxiv
Show abstract

Novel antibodies have been created for targeted degradation of extracellular and membrane proteins in the lysosome. The mechanism of degradation of target proteins for these antibodies has involved either chemical conjugation of synthetic mannose 6-phosphate (M6P) or engineered bispecific antibodies. Currently, recombinant antibodies cannot be produced with naturally phosphorylated N-glycans. Here, we report the development of a novel platform technology for producing bifunctional therapeutic antibodies with high levels of M6P-bearing glycans directly from producing cells. The antibodies designated as phosphorylated N-glycosylated peptide chimeric antibodies (PNCA) maintain their affinity for antigens with concurrent high affinity binding to cell surface cation-independent mannose-6-phosphate receptors that facilitate internalization and delivery of antibody/antigen complexes to lysosomes for efficient degradation of both target extracellular soluble and membrane proteins. This PNCA approach provides a simple, scalable, and viable approach for producing naturally phosphorylated bifunctional antibodies from production cell lines for targeted protein degradation in lysosomes.

Matching journals

The top 11 journals account for 50% of the predicted probability mass.

1
Bioconjugate Chemistry
17 papers in training set
Top 0.1%
18.3%
2
ACS Chemical Biology
150 papers in training set
Top 0.2%
6.8%
3
Antibody Therapeutics
16 papers in training set
Top 0.1%
6.4%
4
Nature Communications
4913 papers in training set
Top 37%
3.9%
5
ChemBioChem
50 papers in training set
Top 0.2%
3.6%
6
Scientific Reports
3102 papers in training set
Top 48%
2.4%
7
JACS Au
35 papers in training set
Top 0.2%
2.1%
8
Journal of the American Chemical Society
199 papers in training set
Top 2%
2.1%
9
ACS Central Science
66 papers in training set
Top 0.9%
1.9%
10
International Journal of Biological Macromolecules
65 papers in training set
Top 1%
1.9%
11
Angewandte Chemie International Edition
81 papers in training set
Top 2%
1.9%
50% of probability mass above
12
RSC Chemical Biology
32 papers in training set
Top 0.2%
1.7%
13
PLOS ONE
4510 papers in training set
Top 53%
1.7%
14
ACS Synthetic Biology
256 papers in training set
Top 2%
1.7%
15
Small Methods
26 papers in training set
Top 0.4%
1.7%
16
Chemical Communications
24 papers in training set
Top 0.5%
1.7%
17
Advanced Science
249 papers in training set
Top 11%
1.7%
18
Analytical Chemistry
205 papers in training set
Top 2%
1.2%
19
Journal of Medicinal Chemistry
68 papers in training set
Top 0.9%
1.2%
20
Cell Discovery
54 papers in training set
Top 4%
1.0%
21
Molecular & Cellular Proteomics
158 papers in training set
Top 2%
0.9%
22
iScience
1063 papers in training set
Top 26%
0.9%
23
Biochemistry
130 papers in training set
Top 1%
0.9%
24
Bioorganic & Medicinal Chemistry Letters
10 papers in training set
Top 0.3%
0.9%
25
Journal of Biological Chemistry
641 papers in training set
Top 4%
0.8%
26
mAbs
28 papers in training set
Top 0.3%
0.8%
27
eLife
5422 papers in training set
Top 55%
0.8%
28
Journal of Molecular Cell Biology
21 papers in training set
Top 0.7%
0.7%
29
Emerging Microbes & Infections
74 papers in training set
Top 2%
0.7%
30
Bioengineering
24 papers in training set
Top 1%
0.7%