CureSCi Metadata Catalog - finding and harmonizing studies for secondary analysis of hydroxyurea use for sickle cell disease
Wu, X.; Stratford, J.; Kesler, K.; Ives, C.; Hendershot, T.; Kroner, B.; Qin, Y.; Pan, H.
Show abstract
ObjectivesSickle cell disease (SCD) is a rare group of inherited red blood cell disorders that affect hemoglobin, resulting in serious multi-system complications. The limited number of patients available to participate in research studies can inhibit investigating sophisticated relationships. Secondary analysis is a research method that involves using existing data to answer new research questions. Data harmonization enables secondary analysis by combining data across studies, especially helpful for rare disease research where individual studies may be small. The National Heart, Lung, and Blood Institute Cure Sickle Cell Initiative (CureSCi) Metadata Catalog is a web-based tool to identify SCD study datasets for conducting data harmonization and secondary analysis. We present a proof-of-concept secondary analysis to explore factors associated with discontinuation of hydroxyurea, a safe and effective first line SCD therapy, to illustrate the utility of the CureSCi Metadata Catalog to expedite and enable more robust SCD research. MethodsWe performed secondary analysis of SCD studies using a multi-step workflow: develop research questions, identify study datasets, identify variables of interest, harmonize variables, and establish an analysis method. A harmonized dataset consisting of eight predictor variables across five studies was created. Secondary analysis involved a generalized linear model was employed to identify factors that significantly impact hydroxyurea discontinuation. ResultsThe CureSCi Metadata Catalog provided a platform to efficiently find relevant studies and design a harmonization strategy to prepare data for secondary analysis. Multivariate analysis of the harmonized identified that patients who are older, are female, had a history of blood transfusion therapy, had episodes of acute chest syndrome, and had the SC sickle cell genotype are more likely to stop hydroxyurea treatment. ConclusionThis secondary analysis provides a template for how the CureSCi Metadata Catalog expedites dataset discovery of sickle cell studies for identifying relationships between variables or validating existing findings.
Matching journals
The top 2 journals account for 50% of the predicted probability mass.
Similar papers in this journal
- Application of observational research methods to real-world studies for rare disease drugs: a scoping review protocol 93%
- Can a specific biobehavioral based therapeutic education program lead to changes in pain perception and brain plasticity biomarkers in chronic pain patients? A study protocol for a randomized clinical trial 92%
- Non-invasive Auricular Vagus nerve stimulation for Subarachnoid Hemorrhage (NAVSaH): Protocol for a prospective, triple-blinded, randomized controlled trial 92%
Similar papers in this journal
- Decision support system to evaluate VENTilation in the Acute Respiratory Distress Syndrome (DeVENT study) – Trial Protocol 92%
- Moderate-Intensity Exercise Versus High-Intensity Interval Training to Recover Walking Post-Stroke: Protocol for a Randomized Controlled Trial 92%
- The effect of osteotomy technique (flat-cut vs wedge-cut Weil) on pain relief and complication incidence following surgical treatment for patients presenting with metatarsalgia in a private metropolitan clinic: Protocol for a randomised controlled trial 91%
Similar papers in this journal
- Integrated ACMG approved genes and ICD codes for the translational research and precision medicine 91%
- MicroRNA childhood Cancer Catalog (M3Cs): A Resource for Translational Bioinformatics Toward Health Informatics in Pediatric Cancer. 89%
- Color Data v2: a user-friendly, open-access database with hereditary cancer and hereditary cardiovascular conditions datasets 88%
Similar papers in this journal
- Use of unstructured text in prognostic clinical prediction models: a systematic review 90%
- Development and Validation of Phenotype Classifiers across Multiple Sites in the Observational Health Sciences and Informatics (OHDSI) Network 90%
- A comprehensive digital phenotype for postpartum hemorrhage 90%
Similar papers in this journal
- Natural Progression of Routine Laboratory Markers following Spinal Trauma: A Longitudinal, Multi-Cohort Study 92%
- Construction of a searchable database for gene expression changes in spinal cord injury experiments 90%
- The Therapy Intensity Level scale for traumatic brain injury: clinimetric assessment on neuro-monitored patients across 52 European intensive care units 89%
"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.