ERGA-BGE genome of Valencia hispanica (Valenciennes, 1826): a critically endangered Iberian toothcarp
Ventura, M.; Franch, N.; Fernandez, R.; Palma-Guerrero, J.; Böhne, A.; Monteiro, R.; Aguilera, L.; Gut, M.; Alioto, T. S.; Camara Ferreira, F.; Cruz, F.; Gomez-Garrido, J.; Haggerty, L.; Martin, F.; Brown, T.
Show abstract
The reference genome of Valencia hispanica, a critically endangered actinopterygian species endemic to the Iberian Peninsula, is key to unravelling its genetic architecture and adaptation to freshwater ecosystems. This genomic resource will enable targeted conservation efforts and shed light on the species essential role in ecological dynamics, including its contributions to algal biomass regulation and role in the aquatic food web while also highlighting the challenges it faces from habitat degradation and invasive species. Furthermore, it offers opportunities to gain valuable insights into the evolutionary paths within the Valenciidae family, significantly advancing our comprehension of genetic diversity and adaptability in aquatic ecosystems. The entirety of the genome sequence was assembled into 24 contiguous chromosomal pseudomolecules. This chromosome-level assembly encompasses 1.29Gb, composed of 99 contigs and 28 scaffolds, with contig and scaffold N50 values of 38.3Mb and 56.9Mb, respectively.
Matching journals
The top 6 journals account for 50% of the predicted probability mass.
Similar papers in this journal
- Chromosome level genome reference of the Caucasian dwarf goby Knipowitschia cf. caucasica, a new alien Gobiidae invadingthe River Rhine 98%
- High quality genome assembly of the brown hare (Lepus europaeus) with chromosome-level scaffolding 97%
- Nanopore genome skimming with Illumina polishing yields highly accurate mitogenome sequences: a case study of Niphargus amphipods 97%
Similar papers in this journal
- High-Quality De Novo Genome Assembly for the Galapagos Endemic Lava Gull Using Oxford Nanopore Technologies 98%
- First Whole-Genome Assembly of the Galapagos Petrel (Pterodroma phaeopygia) Using Oxford Nanopore Sequencing to Advance Conservation Genomics in a Critically Endangered Seabird 97%
- A Chromosome-Level Genome Assembly for the Rock Ptarmigan (Lagopus muta) 97%
Similar papers in this journal
- Comparison of whole-genome assemblies of European river lamprey (Lampetra fluviatilis) and brook lamprey (Lampetra planeri) 97%
- De novo whole genome assembly of the globally invasive green shore crab Carcinus maenas (Linnaeus, 1758) via long-read Oxford Nanopore MinION sequencing 96%
- Reference genome for the Northern bat (Eptesicus nilssonii), a most northern bat species 96%
Similar papers in this journal
- An ancient truncated duplication of the anti-Mullerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family 97%
- A high-quality functional genome assembly of Delia radicum L. (Diptera: Anthomiidae) annotated from egg to adult 95%
- Chromosome-level hybrid de novo genome assemblies as an attainable option for non-model organisms 95%
Similar papers in this journal
- Genome assembly and annotation of Acropora pulchra from Mo'orea French Polynesia 95%
- Whole genome assembly and annotation of the King Angelfish (Holacanthus passer) gives insight into the evolution of marine fishes of the Tropical Eastern Pacific 95%
- Chromosome-level genome assembly of the common chiton, Liolophura japonica (Lischke, 1873) 94%
"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.