Back

PSSR2: a user-friendly Python package for democratizing deep learning-based point-scanning super-resolution microscopy

Stites, H. C.; Manor, U.

2024-06-16 bioinformatics
10.1101/2024.06.16.599221 bioRxiv
Show abstract

PSSR2 improves and expands on the previously established PSSR (Point-Scanning Super-Resolution) workflow for simultaneous super-resolution and denoising of undersampled microscopy data. PSSR2 is designed to put state-of-the-art technology into the hands of the general microscopy and biology research community, enabling user-friendly implementation of PSSR workflows with little to no programming experience required, especially through its integrated CLI and Napari plugin.

Matching journals

The top 6 journals account for 50% of the predicted probability mass.

1
Bioinformatics
◐ 1204 papers in training set
Top 1%
18.2%
2
PLOS Computational Biology
● 1863 papers in training set
Top 3%
10.5%
3
Biological Imaging
◐ 15 papers in training set
Top 0.1%
9.5%
4
Journal of Microscopy
○ 20 papers in training set
Top 0.1%
5.4%
5
BMC Bioinformatics
○ 457 papers in training set
Top 2%
4.8%
6
Nature Methods
○ 385 papers in training set
Top 2%
4.0%
50% of probability mass above
7
Scientific Reports
○ 3612 papers in training set
Top 30%
3.5%
8
PLOS ONE
● 5266 papers in training set
Top 38%
3.2%
9
Bioinformatics Advances
◐ 203 papers in training set
Top 2%
3.2%
10
GigaScience
◐ 212 papers in training set
Top 1%
3.1%
11
Journal of Cell Science
● 393 papers in training set
Top 2%
2.4%
12
Nature Communications
○ 5641 papers in training set
Top 41%
2.4%
13
SoftwareX
○ 15 papers in training set
Top 0.1%
1.9%
14
Molecular Biology of the Cell
● 311 papers in training set
Top 2%
1.7%
15
Biomedical Optics Express
● 95 papers in training set
Top 0.6%
1.7%
16
Briefings in Bioinformatics
◐ 354 papers in training set
Top 6%
1.1%
17
eLife
● 5828 papers in training set
Top 61%
1.0%
18
Optics Express
● 26 papers in training set
Top 0.3%
1.0%
19
Advanced Intelligent Systems
○ 11 papers in training set
Top 0.3%
0.8%
20
NAR Genomics and Bioinformatics
◐ 242 papers in training set
Top 4%
0.8%
21
Journal of Structural Biology
○ 64 papers in training set
Top 0.8%
0.8%
22
IUCrJ
● 32 papers in training set
Top 0.3%
0.8%
23
Wellcome Open Research
○ 67 papers in training set
Top 2%
0.8%
24
Computer Methods and Programs in Biomedicine
○ 28 papers in training set
Top 1%
0.6%
25
Optica
● 27 papers in training set
Top 0.4%
0.6%
26
Current Protocols
○ 15 papers in training set
Top 0.3%
0.6%
27
Computational and Structural Biotechnology Journal
● 242 papers in training set
Top 8%
0.6%
28
Communications Biology
○ 993 papers in training set
Top 36%
0.6%