Back

Non-disruptive inducible labeling of ER-membrane contact sites using the Lamin B Receptor

Downie, L.; Ferrandiz, N.; Jones, M.; Royle, S. J.

2024-10-30 cell biology Community evaluation
10.1101/2024.05.31.596797 bioRxiv
Show abstract

Membrane contact sites (MCSs) are areas of close proximity between organelles that allow the exchange of material, among other roles. The endoplasmic reticulum (ER) has MCSs with a variety of organelles in the cell. MCSs are dynamic, responding to changes in cell state, and are therefore best visualized through inducible labeling methods. However, existing methods typically distort ER-MCSs, by expanding contacts or creating artificial ones. Here we describe a new method for inducible labeling of ER-MCSs using the Lamin B receptor (LBR) and a generic anchor protein on the partner organelle. Termed LaBeRling, this versatile, one-to-many approach allows labeling of different types of ER-MCSs (mitochondria, plasma membrane, lysosomes, early endosomes, lipid droplets and Golgi), on-demand, in interphase or mitotic cells. LaBeRling is non-disruptive and does not change ER-MCSs in terms of the contact number, extent or distance measured; as determined by light microscopy or a deep-learning volume electron microscopy approach. We applied this method to study the changes in ER-MCSs during mitosis and to label novel ER-Golgi contact sites at different mitotic stages in live cells.

Matching journals

The top 3 journals account for 50% of the predicted probability mass.

1
Journal of Cell Biology
333 papers in training set
Top 0.1%
41.1%
2
Journal of Cell Science
353 papers in training set
Top 0.1%
8.8%
3
PLOS ONE
4510 papers in training set
Top 30%
5.1%
50% of probability mass above
4
Molecular Biology of the Cell
272 papers in training set
Top 0.8%
3.0%
5
Traffic
16 papers in training set
Top 0.1%
2.8%
6
eLife
5422 papers in training set
Top 30%
2.8%
7
iScience
1063 papers in training set
Top 7%
2.7%
8
Cell Reports Methods
141 papers in training set
Top 1%
2.5%
9
Scientific Reports
3102 papers in training set
Top 49%
2.2%
10
Frontiers in Cell and Developmental Biology
218 papers in training set
Top 3%
2.2%
11
Nature Methods
336 papers in training set
Top 4%
1.9%
12
Life Science Alliance
263 papers in training set
Top 0.4%
1.5%
13
Nature Communications
4913 papers in training set
Top 54%
1.4%
14
Biophysical Journal
545 papers in training set
Top 4%
1.2%
15
Cytometry Part A
30 papers in training set
Top 0.2%
1.2%
16
Development
440 papers in training set
Top 3%
1.0%
17
Journal of Microscopy
18 papers in training set
Top 0.4%
0.8%
18
The EMBO Journal
267 papers in training set
Top 4%
0.8%
19
Biology Open
130 papers in training set
Top 2%
0.8%
20
Cell Structure and Function
11 papers in training set
Top 0.1%
0.7%
21
BMC Biology
248 papers in training set
Top 4%
0.7%
22
Cells
232 papers in training set
Top 7%
0.7%
23
Open Biology
95 papers in training set
Top 3%
0.7%
24
Briefings in Bioinformatics
326 papers in training set
Top 7%
0.7%
25
Autophagy
32 papers in training set
Top 0.2%
0.7%
26
Journal of Structural Biology
58 papers in training set
Top 2%
0.7%
27
Biochimica et Biophysica Acta (BBA) - Molecular Cell Research
28 papers in training set
Top 0.6%
0.7%
28
Developmental Biology
134 papers in training set
Top 3%
0.7%
29
Frontiers in Synaptic Neuroscience
14 papers in training set
Top 0.1%
0.5%
30
Cell Reports
1338 papers in training set
Top 36%
0.5%