Back

Optimal AAV capsid/promoter combinations to target specific cell types in the common marmoset cerebral cortex

Matsuzaki, Y.; Fukai, Y.; Konno, A.; Hirai, H.

2024-05-10 neuroscience
10.1101/2024.05.09.593444 bioRxiv
Show abstract

To achieve cell type-specific gene expression, using target cell-tropic AAV capsids is advantageous. However, their tropism across brain cell types remains unexplored in non-human primates. We assessed the tropism of nine AAV serotype capsids (AAV1, 2, 5, 6, 7, 8, 9, rh.10 (rh10), and DJ) on marmoset cerebral cortical cell types. Marmoset cerebral cortex was injected with different serotype AAVs expressing enhanced GFP (EGFP) by the ubiquitous chicken {beta}-actin hybrid (CBh) promoter. After 4 weeks, all nine AAV capsid vectors, especially AAV9 and AAVrh10, caused highly neuron-selective EGFP expression. Some AAV capsids, including AAV5, caused EGFP expression in oligodendrocytes to a lesser extent, with minimal or no expression in astrocytes and microglia. Different ubiquitous CMV and CAG promoters showed similar neuron-predominant transduction. Conversely, all nine AAV capsid vectors with the astrocyte-specific hGFA(ABC1D) promoter selectively transduced astrocytes, except AAV5, which transduced oligodendrocytes modestly. Oligodendrocyte-specific mouse myeline basic protein (mMBP) promoter in AAV5 vectors transduced oligodendrocytes specifically and efficiently. Our results suggest optimal combinations of capsids and promoters for cell type-specific expression: AAV9 or AAVrh10 and ubiquitous CBh, CMV, or CAG promoter for neuron-specific transduction; AAV2 or 7 and hGFA(ABC1D) promoter for astrocyte-specific transduction; and AAV5 and mMBP promoter for oligodendrocyte-specific transduction.

Matching journals

The top 8 journals account for 50% of the predicted probability mass.

1
Molecular Therapy - Methods & Clinical Development
38 papers in training set
Top 0.1%
10.5%
2
Journal of Neuroscience Methods
106 papers in training set
Top 0.1%
7.5%
3
Scientific Reports
3102 papers in training set
Top 13%
7.1%
4
Molecular Therapy Methods & Clinical Development
13 papers in training set
Top 0.1%
7.1%
5
Molecular Therapy Nucleic Acids
32 papers in training set
Top 0.1%
6.6%
6
PLOS ONE
4510 papers in training set
Top 26%
6.6%
7
eneuro
389 papers in training set
Top 2%
4.5%
8
Journal of Virology
456 papers in training set
Top 1%
3.7%
50% of probability mass above
9
iScience
1063 papers in training set
Top 4%
3.7%
10
Molecular Therapy
71 papers in training set
Top 0.9%
2.8%
11
Journal of Comparative Neurology
66 papers in training set
Top 0.3%
2.5%
12
Cell Reports Methods
141 papers in training set
Top 2%
1.8%
13
Frontiers in Neuroanatomy
14 papers in training set
Top 0.1%
1.8%
14
The Journal of Neuroscience
928 papers in training set
Top 6%
1.5%
15
Nature Communications
4913 papers in training set
Top 54%
1.4%
16
International Journal of Molecular Sciences
453 papers in training set
Top 10%
1.3%
17
JCI Insight
241 papers in training set
Top 5%
1.3%
18
Frontiers in Neurology
91 papers in training set
Top 4%
1.0%
19
Journal of Translational Medicine
46 papers in training set
Top 2%
0.9%
20
Frontiers in Synaptic Neuroscience
14 papers in training set
Top 0.1%
0.8%
21
Biochemical and Biophysical Research Communications
78 papers in training set
Top 2%
0.8%
22
Frontiers in Cellular Neuroscience
79 papers in training set
Top 1%
0.7%
23
Frontiers in Neuroscience
223 papers in training set
Top 7%
0.7%
24
The American Journal of Pathology
31 papers in training set
Top 0.5%
0.7%
25
Viruses
318 papers in training set
Top 6%
0.7%
26
Heliyon
146 papers in training set
Top 8%
0.7%
27
Frontiers in Bioengineering and Biotechnology
88 papers in training set
Top 4%
0.5%
28
Fluids and Barriers of the CNS
21 papers in training set
Top 0.5%
0.5%
29
European Journal of Neuroscience
168 papers in training set
Top 2%
0.5%
30
Neuroscience Letters
28 papers in training set
Top 2%
0.5%