Genome-wide Mendelian Randomization Identifies Potential Drug Targets for Dorsopathies
Cui, Y.; Guo, J.; Lu, Y.; Hu, M.; Zhou, H.; Zhang, W.; Tang, S.
Show abstract
BackgroundDorsopathies are a group of musculoskeletal disorders affecting the spinal column and related structures, contributing significantly to global disability rates and healthcare costs. Despite their prevalence, the genetic and biological mechanisms underlying dorsopathies are not fully understood. MethodSummary-data-based Mendelian Randomization (SMR) and colocalization analysis were employed, using data from genome-wide association studies (GWAS) and cis-expression quantitative trait loci (cis-eQTLs) databases. Genes with a colocalization posterior probability (PP.H4) above 0.7 in SMR results were selected for additional analysis. These selected genes underwent MR analysis to examine possible causal connections with dorsopathies, and sensitivity analyses were carried out to ensure robustness. Additionally, two transcriptome-wide association studies (TWAS) were utilized to confirm and screen for potential drug targets. ResultWe identified four essential genes linked to dorsopathies: NLRC4, CGREF1, KHK, and RNF212. Mendelian randomization (MR) analysis revealed a potential causal link between these genes and dorsopathies. Elevated transcription levels of NLRC4, CGREF1, and KHK correlated with reduced dorsopathies risk, while increased levels of RNF212 were associated with heightened risk of dorsopathies. Regarding methylation sites, an increase in cg04686953 fully mediated the decreased risk of dorsopathies by RNF212. Similarly, the risk effect of cg26638505 and cg18948125 was entirely mediated by NLRC4, while CGREF1 predominantly mediated the risk-increasing effect of cg06112415 and the decrease effect of cg22740783. ConclusionDorsopathies were associated with four pivotal genes: NLRC4, CGREF1, KHK, and RNF212. Methylation analysis identified cg04686953 and cg22740783 as protective against dorsopathies risk, while cg26638505, cg18948125, and cg06112415 exhibited a risk-increasing impact.
Matching journals
The top 7 journals account for 50% of the predicted probability mass.
Similar papers in this journal
- The Dynamic Nature of Genetic Risk for Schizophrenia Within Genes Regulated by FOXP1 During Neurodevelopment 94%
- Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control. 93%
- Identifying X-Chromosome Variants Associated with Age-Related Macular Degeneration 92%
Similar papers in this journal
- Comprehensive profiling of genomic and transcriptomic differences between risk groups of lung adenocarcinoma and lung squamous cell carcinoma 92%
- White blood cells and severe COVID-19: a Mendelian randomization study 91%
- Intersections between copper, β-arrestin-1, calcium, FBXW7, CD17, insulin resistance and atherogenicity mediate depression and anxiety due to type 2 diabetes mellitus: a nomothetic network approach 91%
Similar papers in this journal
- Genetic analyses of inflammatory polyneuropathy and chronic inflammatory demyelinating polyradiculoneuropathy identified candidate genes 97%
- Using Genetics, Genomics, and Transcriptomics to Identify Therapeutic Targets in Juvenile Idiopathic Arthritis 93%
- Unbiased human genomic characterization of polyglutamine disorder genes to inform therapeutic strategies 91%
Similar papers in this journal
- Defining Mechanistic Links Between the Non-Coding Variant rs17673553 in CLEC16A and Lupus Susceptibility 94%
- Identification of ATP2B4 regulatory element containing functional genetic variants associated with severe malaria 93%
- Genome-wide association study of COVID-19 Breakthrough Infections and genetic overlap with other diseases: A study of the UK Biobank 93%
Similar papers in this journal
"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.