Back

Interplay of hierarchical dynamics and their microscopic structures of polyampholyte gels and proteins

Zhao, Y. h.; Muthukumar, M.; Jia, D.

2024-04-27 biochemistry
10.1101/2024.04.26.591408 bioRxiv
Show abstract

Polyampholyte gel is a perfect physics model to mimic condensed state of proteins. We have studied the hierarchical dynamics of polyampholyte gels by dynamic light scattering. In addition to the normal gel mode, which indicates the gel elasticity, we also discovered a new mode with a stretched exponential decay with the stretched exponent {beta} = 1/3, and a diffusive exponential decay, which indicates the coupled motion between counterion and the polyampholyte backbone. After dialysis to low salt concentration, the coupled motion of the counterion will go away, so that there are only two modes. Combined with a newly developed theory, we attribute this stretched exponential mode to hierarchical dynamics of the segments between two crosslinking junctions, whose segmental distribution obeys Poisson distribution. As salt concentration inside the gel increases, {beta} decreases from 0.38 to 0.33, which is consistent with theoretical results. The gel with the molar charge ratio R=1, which is at the charge balance point, has the highest value {beta} = 0.38. As long as R deviates further away from the charge balance point from either side, the {beta} values decrease. When the gel is 100% positive charged, their dynamic light scattering results will go back to that of the normal polyelectrolyte gels.

Matching journals

The top 10 journals account for 50% of the predicted probability mass.

1
Physical Chemistry Chemical Physics
34 papers in training set
Top 0.1%
10.3%
2
Soft Matter
50 papers in training set
Top 0.1%
6.5%
3
PLOS Computational Biology
1633 papers in training set
Top 5%
6.4%
4
eLife
5422 papers in training set
Top 16%
4.9%
5
The Journal of Physical Chemistry B
158 papers in training set
Top 0.4%
4.0%
6
Scientific Reports
3102 papers in training set
Top 30%
4.0%
7
The Journal of Chemical Physics
49 papers in training set
Top 0.1%
4.0%
8
PLOS ONE
4510 papers in training set
Top 37%
3.7%
9
Biophysical Journal
545 papers in training set
Top 2%
3.7%
10
Physical Biology
43 papers in training set
Top 0.4%
3.7%
50% of probability mass above
11
BioMed Research International
25 papers in training set
Top 0.8%
3.1%
12
ACS Omega
90 papers in training set
Top 1%
2.1%
13
Physical Review Letters
43 papers in training set
Top 0.3%
1.7%
14
Biochemical and Biophysical Research Communications
78 papers in training set
Top 0.8%
1.4%
15
Journal of Structural Biology
58 papers in training set
Top 0.9%
1.4%
16
Quantitative Biology
11 papers in training set
Top 0.3%
1.4%
17
RSC Advances
18 papers in training set
Top 0.9%
1.2%
18
Computational and Structural Biotechnology Journal
216 papers in training set
Top 7%
0.9%
19
Physical Review E
95 papers in training set
Top 1%
0.9%
20
Cell Reports Physical Science
18 papers in training set
Top 0.5%
0.9%
21
Methods
29 papers in training set
Top 0.5%
0.8%
22
Frontiers in Molecular Biosciences
100 papers in training set
Top 4%
0.8%
23
The Journal of Physical Chemistry Letters
58 papers in training set
Top 1%
0.8%
24
Frontiers in Public Health
140 papers in training set
Top 7%
0.8%
25
International Journal of Molecular Sciences
453 papers in training set
Top 15%
0.8%
26
Computers in Biology and Medicine
120 papers in training set
Top 4%
0.8%
27
Epidemics
104 papers in training set
Top 2%
0.8%
28
Communications Biology
886 papers in training set
Top 23%
0.8%
29
Biophysical Chemistry
14 papers in training set
Top 0.1%
0.8%
30
Nonlinear Dynamics
10 papers in training set
Top 0.4%
0.8%