Building a Collaborative DNA Barcode Library for the Diptera of Churchill, Canada: A Resource for Northern Research
Majoros, S. E.; Wang, J.; Levesque-Beaudin, V.; Borkent, C. J.; Brodo, F.; Brooks, S. E.; Boucher, S.; Cumming, J. M.; Currie, D. C.; Ekrem, T.; Elliott, T. A.; Hebert, P. D. N.; Savage, J.; Schaefer, P.; Sinclair, B. J.; Skevington, J. H.; Solecki, A. M.; Stur, E.; Wheeler, T. A.; Woodcock, T. S.; Young, A. D.; Young, C.; Adamowicz, S. J.
Show abstract
Churchill, Manitoba, Canada is a diverse Subarctic region that has been the focus of DNA barcoding efforts and research for decades. Despite this effort, there are still taxa in this region that are underrepresented in public databases, particularly hyperdiverse insect groups. We present a collaborative large-scale DNA barcode reference library for Diptera based on molecular data and expert taxonomic identification. The reference library contains 16786 specimens sampled around Churchill from 2005 to 2011. Specimens were identified by morphological means, sequenced for the animal barcode marker, and sorted into 2235 Molecular Operational Taxonomic Units (using Barcode Index Numbers: BINs) representing 68 families and 1211 named species. Eighty-four species shared a BIN with another species, 98 species were split across several BINs, and 1028 species were assigned to a unique BIN. The intraspecific and nearest neighbour distances varied across families, but most species can be easily distinguished from their nearest neighbours. By combining molecular data with taxonomic expertise, the barcode library provides species-level information for 12612 specimens, supplying future researchers with detailed taxonomic information and the opportunity to perform barcode-based specimen identifications for large-scale studies through sequence matching. Comparison of the Diptera composition of Churchill to other geographic regions reflected likely postglacial colonization northwards as well as a Beringian component. This study provides a publicly available, detailed reference library for use in future research, as well as new insights into the current diversity of Diptera present among the diverse habitats in this Subarctic region.
Matching journals
The top 6 journals account for 50% of the predicted probability mass.
Similar papers in this journal
- Omnivorous diets of sympatric duck species in a subtropical East Asia wetland unveiled by multi-marker DNA metabarcoding 96%
- eDNA in a bottleneck: obstacles to fish metabarcoding studies in megadiverse freshwater systems 95%
- eDNA metabarcoding reveals a core and secondary diets of the greater horseshoe bat with strong spatio-temporal plasticity 95%
Similar papers in this journal
- Welcome to Hotel Hymenoptera: monitoring cavity-nesting bee and wasp distribution and their trophic interactions using community science and metabarcoding 95%
- Revision and annotation of DNA barcode records for marine invertebrates: report of the 8th iBOL conference hackathon 94%
- The mitochondrial genomes of 11 aquatic macroinvertebrate species from Cyprus 93%
Similar papers in this journal
Similar papers in this journal
- The complete mitochondrial genome sequence of Oryctes rhinoceros (Coleoptera: Scarabaeidae) based on long-read nanopore sequencing 95%
- Invasion history of Harmonia axyridis (Pallas, 1773) (Coleoptera: Coccinellidae) in Ecuador 95%
- Characterization of habitat requirements of European fishing spiders 94%
Similar papers in this journal
- The unseen invaders: tracking phylogeographic dynamics and genetic diversity of cryptic Pomacea canaliculata and P. maculata (Golden Apple Snails) across Taiwan 94%
- Tiny killers: first record of rhabdocoel flatworms feeding on water flea embryos 94%
- Hybridization and Low Genetic Diversity in the Endangered Alabama Red-Bellied Turtle (Pseudemys alabamensis) 94%
"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.